PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_3720V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRF
Protein Properties Length: 447aa    MW: 46665.4 Da    PI: 10.0037
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_3720V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-2488131144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRC r+v++++k+CErH+hrgr+rsr++ e
  Pp3c12_3720V3.2.p  88 DPEPGRCRRTDGKKWRCARDVVPDQKYCERHMHRGRHRSRRPAE 131
                        79**************************************9876 PP
2QLQ55.71.5e-192358237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       +FT +Q+++L++Q+l++Ky++a++ vP+eLl +i+k
  Pp3c12_3720V3.2.p 23 PFTTSQWAELEHQALIFKYMMAGVNVPQELLNPIRK 58
                       9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-102258IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.5E-152357IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.5422358IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.7788132IPR014977WRC domain
PfamPF088791.5E-2089129IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGRESMNHMG QSVHNPVNSA RAPFTTSQWA ELEHQALIFK YMMAGVNVPQ ELLNPIRKSV  60
ATMNGLASHH TANLGWGAFH LGVPNNTDPE PGRCRRTDGK KWRCARDVVP DQKYCERHMH  120
RGRHRSRRPA EGQTSSASQS GSVASSAPQP AIAVGASRTS TPTPGTSLTH SNLRPAILTG  180
NSQSTSNLGG GGMGYNSPGG SGGLSGGSSP AASPAQFQLP VLSSATGSSG LTSKDYRYMN  240
GMAVKSEMGM GPEQVLFSEA SGSTRGLSQE AQSLSNLSRL NTPMNKAWQT MTSSKVLPAA  300
QSKGSGSSSL LSFSSPQMGG LLGQEFGLMP ETSQVNLAAM AASQQQHSFL SNGYGGVEST  360
SVGRESSEGQ PLRHFFDDWP RSRDPSALAW GSDVEDSDRT TSAGRGGQSN RASNNTQLSI  420
SIPMTAAPSG DFNSQSSGGS PSRGSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390741.10.0growth-regulating factor 6-like
TrEMBLA0A2K1JPB20.0A0A2K1JPB2_PHYPA; Uncharacterized protein
STRINGPP1S246_146V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-35growth-regulating factor 2