PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_3720V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRF
Protein Properties Length: 764aa    MW: 79892.9 Da    PI: 8.3262
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_3720V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.65e-24238281144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRC r+v++++k+CErH+hrgr+rsr++ e
  Pp3c12_3720V3.1.p 238 DPEPGRCRRTDGKKWRCARDVVPDQKYCERHMHRGRHRSRRPAE 281
                        79**************************************9876 PP
2QLQ54.82.8e-19173208237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        +FT +Q+++L++Q+l++Ky++a++ vP+eLl +i+k
  Pp3c12_3720V3.1.p 173 PFTTSQWAELEHQALIFKYMMAGVNVPQELLNPIRK 208
                        9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-10172208IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-14173207IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.542173208IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.77238282IPR014977WRC domain
PfamPF088793.0E-20239279IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MHTMSSPNSP GSLSPNNHRS SLKHCRSASD MDLEDRRGGG PLKVSRTDSF HRQSDLKMHM  60
NGSPSGTMVL SSSMVSDGRL GCSPTNSCAS DGSLLGNDQG NVVSDARLLR QDSLVAASGY  120
SGGQGGGRPL SYHHLQSSSY HYKPSGGGLS MGRESMNHMG QSVHNPVNSA RAPFTTSQWA  180
ELEHQALIFK YMMAGVNVPQ ELLNPIRKSV ATMNGLASHH TANLGWGAFH LGVPNNTDPE  240
PGRCRRTDGK KWRCARDVVP DQKYCERHMH RGRHRSRRPA EGQTSSASQS GSVASSAPQP  300
AIAVGASRTS TPTPGTSLTH SNLRPAILTG NSQSTSNLGG GGMGYNSPGG SGGLSGGSSP  360
AASPAQFQLP VLSSATGSSG LTSKDYRYMN GMAVKSEMGM GPEQVLFSEA SGSTRGLSQE  420
AQSLSNLSRL NTPMNKAWQT MTSSKVLPAA QSKGSGSSSL LSFSSPQMGG LLGQEFGLMP  480
ETSQVNLAAM AASQQQHSFL SNGYGGVEST SVGRESSEGQ PLRHFFDDWP RSRDPSALAW  540
GSDVEDSDRT TSAGRGGQSN RASNNTQLSI SIPMTAAPSG DFNSQSSGGS PSRGKLSLSP  600
LKFSISRAGD ASSDMGLDVE NLRVERHHDW HRHTTAWDSM SWEPISVGGP LAEVLQLGST  660
TQCGGGGGGV DGSGPNLLAD EWLDLHQKKS ASPVQIPSPD RVASPVDVLQ ISTFASHSDS  720
SNSNSGASSP SGALPFDPAS TISEFATVIR MSLSSSSSQN ESR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390741.10.0growth-regulating factor 6-like
TrEMBLA0A2K1JPB20.0A0A2K1JPB2_PHYPA; Uncharacterized protein
STRINGPP1S246_146V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.17e-34growth-regulating factor 2