PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_25330V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 283aa    MW: 31811.5 Da    PI: 4.9923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_25330V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-194292155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr +  +g+Wv+eIr+p++   r r++lg+f tae+Aa+a++aa  +l+g
  Pp3c12_25330V3.2.p 42 PRYKGVRKRQ-WGKWVSEIREPRK---RSRIWLGSFPTAEMAARAYDAAVVCLRG 92
                        68*****888.**********954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-124292IPR001471AP2/ERF domain
CDDcd000183.94E-3442102No hitNo description
PROSITE profilePS5103224.13143100IPR001471AP2/ERF domain
SMARTSM003802.5E-3843106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3243102IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2243102IPR016177DNA-binding domain
PRINTSPR003679.0E-104455IPR001471AP2/ERF domain
PRINTSPR003679.0E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVQKDWSSRG TLDIGTDTLH CQGLGRDKQQ HAMMKEESTA SPRYKGVRKR QWGKWVSEIR  60
EPRKRSRIWL GSFPTAEMAA RAYDAAVVCL RGPSAALNFP DSPPLSLPEC HTPREIQVVA  120
AAAATAAESC TPLNFQVKEE AQSLGFQLSI RNETNVSPRS HLRPVESENS STSEGRSRKI  180
DLSSKDEHDE ELDYTGESCP PLLTADDYYV SLDDVELAWD NMKVDDLNFL DLPPLEDFFE  240
DGPRKLTKTN SGRQSLVQYC RQFSSNYERV DSMHLVCDVF TM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-17431001472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390306.10.0ethylene-responsive transcription factor TINY-like
TrEMBLA0A2K1JS590.0A0A2K1JS59_PHYPA; Uncharacterized protein
STRINGPP1S155_21V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-31ERF family protein