PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_22890V3.3.p | ||||||||
Common Name | MADS2, PHYPADRAFT_166549, PpMADS2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 418aa MW: 46722.4 Da PI: 7.4452 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.2 | 3.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRrng++KKA+ELSvLCd++ a+i+fs++gkl y++ Pp3c12_22890V3.3.p 9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDLALIMFSPSGKLTQYCN 59 68***********************************************85 PP | |||||||
2 | K-box | 17.7 | 1.5e-07 | 131 | 201 | 5 | 72 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGed..Les.LslkeLqqLeqqLekslkkiRskKnel 72 sg++ ++ +ae lqqel+k ++e e q+ R +l ++ L+ s+++L ++e++Le++l+++R++Kn + Pp3c12_22890V3.3.p 131 SGSKSSSYEAEVLQQELKKAQQEKELVQQRARLYLADEqlLQGvTSVQQLANMETELEQALERVRARKNYV 201 66678888999*****************9999888765444442589*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.875 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.86E-37 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-31 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.02 | 140 | 240 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDLALIMFSP SGKLTQYCNC 60 SIEEVIARFA NLPMHERNKS FEDMLTRFAN NQMHHDRSKY TRKIENLEYL HKALKKLAGE 120 KDLVSNQQLL SGSKSSSYEA EVLQQELKKA QQEKELVQQR ARLYLADEQL LQGVTSVQQL 180 ANMETELEQA LERVRARKNY VSSAYQTANA LQRQQHEFLG NSLQMMALRQ QQQQQQQQAG 240 MGGTPSFLHW TMQSERPEPT QDFMEQQTNS SASLMPAPLS IREPGSNGEA NPAAAAYFPA 300 GPQPGALESL RQMGMAAASR GLTMHEMSLE QPNGQYIEDQ QKKAKVEGSM GFATSSSAAE 360 AVSENTVTRD HQQSEQTDVN GGAADWPPHP ANHHPNAFTN GGLFSSFSQN GHHPAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-17 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6byy_A | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.135 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB067689 | 0.0 | AB067689.1 Physcomitrella patens PpMADS2 mRNA for MADS-box protein PpMADS2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391426.1 | 0.0 | MADS-box transcription factor 3-like | ||||
TrEMBL | A9STY7 | 0.0 | A9STY7_PHYPA; MIKC MADS-domain protein PpMADS2 | ||||
STRING | PP1S118_161V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-33 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_22890V3.3.p |
Entrez Gene | 5932968 |
Publications ? help Back to Top | |||
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