PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_22890V3.2.p

Common Name

MADS2, PHYPADRAFT_166549, PpMADS2

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MIKC_MADS

Protein Properties

Length: 418aa MW: 46722.4 Da PI: 7.4452

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_22890V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.2	3.7e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRrng++KKA+ELSvLCd++ a+i+fs++gkl y++ Pp3c12_22890V3.2.p 9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDLALIMFSPSGKLTQYCN 59 68***********************************************85 PP
2	K-box	17.7	1.5e-07	131	201	5	72
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGed..Les.LslkeLqqLeqqLekslkkiRskKnel 72 sg++ ++ +ae lqqel+k ++e e q+ R +l ++ L+ s+++L ++e++Le++l+++R++Kn + Pp3c12_22890V3.2.p 131 SGSKSSSYEAEVLQQELKKAQQEKELVQQRARLYLADEqlLQGvTSVQQLANMETELEQALERVRARKNYV 201 66678888999***************9999888765444442589*******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.3E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.875	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.86E-37	2	73	No hit	No description
SuperFamily	SSF55455	4.84E-31	2	88	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-26	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	10.02	140	240	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDLALIMFSP SGKLTQYCNC 60 SIEEVIARFA NLPMHERNKS FEDMLTRFAN NQMHHDRSKY TRKIENLEYL HKALKKLAGE 120 KDLVSNQQLL SGSKSSSYEA EVLQQELKKA QQEKELVQQR ARLYLADEQL LQGVTSVQQL 180 ANMETELEQA LERVRARKNY VSSAYQTANA LQRQQHEFLG NSLQMMALRQ QQQQQQQQAG 240 MGGTPSFLHW TMQSERPEPT QDFMEQQTNS SASLMPAPLS IREPGSNGEA NPAAAAYFPA 300 GPQPGALESL RQMGMAAASR GLTMHEMSLE QPNGQYIEDQ QKKAKVEGSM GFATSSSAAE 360 AVSENTVTRD HQQSEQTDVN GGAADWPPHP ANHHPNAFTN GGLFSSFSQN GHHPAWK*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDLALIMFSP SGKLTQYCNC  60
SIEEVIARFA NLPMHERNKS FEDMLTRFAN NQMHHDRSKY TRKIENLEYL HKALKKLAGE  120
KDLVSNQQLL SGSKSSSYEA EVLQQELKKA QQEKELVQQR ARLYLADEQL LQGVTSVQQL  180
ANMETELEQA LERVRARKNY VSSAYQTANA LQRQQHEFLG NSLQMMALRQ QQQQQQQQAG  240
MGGTPSFLHW TMQSERPEPT QDFMEQQTNS SASLMPAPLS IREPGSNGEA NPAAAAYFPA  300
GPQPGALESL RQMGMAAASR GLTMHEMSLE QPNGQYIEDQ QKKAKVEGSM GFATSSSAAE  360
AVSENTVTRD HQQSEQTDVN GGAADWPPHP ANHHPNAFTN GGLFSSFSQN GHHPAWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	1e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	1e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	1e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	1e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
6byy_A	2e-17	1	85	1	85	MEF2 CHIMERA
6byy_B	2e-17	1	85	1	85	MEF2 CHIMERA
6byy_C	2e-17	1	85	1	85	MEF2 CHIMERA
6byy_D	2e-17	1	85	1	85	MEF2 CHIMERA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.135	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB067689	0.0	AB067689.1 Physcomitrella patens PpMADS2 mRNA for MADS-box protein PpMADS2, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391426.1	0.0	MADS-box transcription factor 3-like
TrEMBL	A9STY7	0.0	A9STY7_PHYPA; MIKC MADS-domain protein PpMADS2
STRING	PP1S118_161V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-33	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Pp3c12_22890V3.2.p
Entrez Gene	5932968

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]