PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_22800V3.4.p
Common NamePHYPADRAFT_166554
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 681aa    MW: 73895.4 Da    PI: 7.2554
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_22800V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.59.8e-151498180
            trihelix  1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwen.lnkrykkikegekkrtsessstcp 80
                        rWt++e+ +L +a + +ee+  + +       ++ +We +sk++r++g++rs  qC ++w++ l  +ykk+++++kk+  +++s ++
  Pp3c12_22800V3.4.p 14 RWTRSETVVLANALKAREEEAHDVAsksavgTAGDKWENISKFCRSHGVTRSGAQCSSRWSKgLYLDYKKVRDWQKKE--DAESYWK 98
                        8*********99999888888864323456699***************************9779************95..5555565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-71399No hitNo description
Gene3DG3DSA:1.10.10.601.5E-414111IPR009057Homeodomain-like
PROSITE profilePS500906.7371477IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MEGGGEEEHA VGHRWTRSET VVLANALKAR EEEAHDVASK SAVGTAGDKW ENISKFCRSH  60
GVTRSGAQCS SRWSKGLYLD YKKVRDWQKK EDAESYWKMK EKKRREHKLP GALDEEVFNI  120
LVSFLDPDLK QTGTPESEVD SDRPFHVTSS APAIDKSAAV PQQAGPSVSA ACATPSQISG  180
GSSDGVGSMS DFARLQARAT TGESLQPLKY QIGGSPGGDQ NPVISGQKRK RASISSHIGA  240
PATADGRVHS IDPPNLESIK PIHFNVPPPL DSVRFNEPTV AERSSTAQWD GPPNLASLEA  300
RLGAQSEAIW NRVRMLNEQV VQVVDMSNQR LLGQMQSLFT QIRLQLQVIS AQMQANVHEA  360
TRSLQAELQS VLQAHTEQIC SQVQAHYSSR VPHPQGQAPP KDRAAQNSNW GGDRTPRPTP  420
PDIQVDFSQL PVPVPVPVSL LQPVQTAPDK EKVFRQRTGE LSSPAPRTNR LLPHISDVQK  480
AESLVASKTS RLPPHISDVD RILRQQQGLP LPSPMPNWNQ ASFVISELDR VLGHKPGSLD  540
MHMIPPAPGQ SRCTYAVNET DRNLGQRQSA DVKMEKAPPS SFSMALSMSS QGPPLWSQGP  600
IHSDVLALPS VSENPNQSIE TSSGQDVEPN SRHHPASSDT VDGDETEGSG QDVGASSEKM  660
GGHHTRGGAR GRTQPNRLRL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119710.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391555.10.0uncharacterized protein LOC112289976
RefseqXP_024391556.10.0uncharacterized protein LOC112289976
TrEMBLA9STZ40.0A9STZ4_PHYPA; Predicted protein
STRINGPP1S118_174V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-22Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]