PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_21500V3.6.p | ||||||||
Common Name | PHYPADRAFT_233852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 2211aa MW: 235575 Da PI: 5.4326 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 767 | 810 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ ++v+++G++ +++Ia ++g +++ qck ++ k Pp3c12_21500V3.6.p 767 QWTDRERELFTEGVRLFGKD-FERIAVHVGSTKSVGQCKAFFCKT 810 5*****************99.*********99********99886 PP | |||||||
2 | Myb_DNA-binding | 34.1 | 6.1e-11 | 1292 | 1333 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++d ++ +G++ W++ ++++ ++l q+k ++q+ Pp3c12_21500V3.6.p 1292 SWTQEEKEKFADIIRNHGKD-WTRLHECLP-SKSLTQIKTYFQN 1333 7*****************99.*********.************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.46E-13 | 504 | 567 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-4 | 513 | 560 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 17.276 | 516 | 567 | IPR017884 | SANT domain |
SMART | SM00717 | 2.1E-7 | 517 | 565 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 17.617 | 763 | 815 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-8 | 764 | 813 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-7 | 767 | 809 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.09E-9 | 767 | 817 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-5 | 768 | 809 | No hit | No description |
SuperFamily | SSF46689 | 2.48E-10 | 1287 | 1337 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.542 | 1288 | 1339 | IPR017884 | SANT domain |
SMART | SM00717 | 7.1E-9 | 1289 | 1337 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-7 | 1290 | 1334 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-8 | 1292 | 1333 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-6 | 1292 | 1335 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 2211 aa Download sequence Send to blast |
MVECDGVEQE VVGKVCERVA AEAEAGGWIS KPEGVVADDV EKRGNMRAVT ECGLEESVRQ 60 GECCEALGLK ESMECQASPK VRGSVEHCGG VEVGGEVGVS DAGSRWAKED ILLRVEKVEY 120 EIEEVERELA KAEKVGSDRR AAGEWVAGVV GDEGSAGVDG VVKVEDGIDD GEAMDVDAAE 180 VHPGRVDSRE SGEAMQVACS GRNWSGGEEC GNGRWGSDGA GAAGNVGERV GGGVSEGGHG 240 GSVDDGGVLE EGELGEEKQE EWTSKQMSVG LESEGNPAYS PRAETEPAQR EEMDVTAGVS 300 KCGVAEKEEA ERKVISWDVE VVARSLMEEN KKRAEQARET FVHLLREGVG VEGTLYRCPA 360 EAGVWKENVE RHYRNQERML EKMGERRQSL RFAEQVLAMR FRALKEAWKQ EQVGMRQQQR 420 GTKPVRRWEV EKRNGTALHC HRSSLRLRPV QAGMEKVEAV SEECMKKVMA KAVVGPVRGV 480 LKMPSMIVGQ ENRLARRFES KNALVEDPVG MERERKSMNP WSWEEKRVFL EKFAVYNKNF 540 SKIASHLELK TTADCVEFYY RNQKSEDFER IRRRQQLKKR RDYSRVGGSF LSTGLQTSSQ 600 RREANGHGRT EGANVQTVGA VVGVSHISVG TKAARSSMQQ KPVERQRVSS ALEPGSLPGA 660 VEIGKGVSGK ENKWCGTGGV SGSAAGRGGI FGMVLSGATV SCGLSSAVAG AVKIGRERSS 720 VKTMVDAGLV VARCGQYEPN CFGAKGTRSI HPPLGLENFA KEEGDAQWTD RERELFTEGV 780 RLFGKDFERI AVHVGSTKSV GQCKAFFCKT RKRLGLDKLV EKYEDSLKVR YGGVMAESLE 840 CADVGRGEAA GMVAEDLRTS SLFECSCPGM EVESHGDKGD ENEKSVEAVV PVDVQEMEAV 900 EVEAVEGVRV EGVVVEVQSV ESEVVQDVAI ADDALVNGDV EPRGIEGFVA EDDASQELMS 960 KDEAIEKSVE DTGFEIAVVV ASAADADVDK ASSNASVEVT AFNEALRDET VEDAAVEQVV 1020 VSECLDAAAG ILENENLAVE GSIVLEQVGT DGHPDEGRGV GGVAVETSNG VCEEGNGDAV 1080 GATSVVVISK DVLLGSFVCL KEDTAIVDSA CPADREPVAS TPAVDASGAE DPVCVRTDAV 1140 NVPNDASVEA VKVDAAEDVF TGNKSTDLAA GCTIREGDPA DVVKVAESGL ESSKCVAAVG 1200 VDKAVFPVTK MSTQVADEPE AKASPKVDVK SEPGSPQVAT SVSTDSASFT SAAAAVSHSG 1260 EPVFSTTSSM QGREKVGRVG GGETKSRREP TSWTQEEKEK FADIIRNHGK DWTRLHECLP 1320 SKSLTQIKTY FQNSKAKLGL LNAEGVNVPG GRVAGSRKRK VDEAENGSNN VSCLSSGNEL 1380 KGGGVSASDM DGVCQNVKAA VGGVPSMNPS MGMGSGPSGL ESMLYPFLGQ RVEDQIALQN 1440 FVRMYSANGL AQNIAGGVNP FVQQYGFPMF PNAGHQRASQ LSLQQQLAAS LAQKSGQAKG 1500 LQQQELQGFG SVQQSGQASV QQKVAHQLQS AQMVRNQQLL ASVMQHQAAA HHQQNQTSKS 1560 VPHPLQPQVV VPQPGVAGQR QQHPQAQQGG SQQEQGSPGH PIGNPSLGVG NPTQASTQTK 1620 QLQQPQVSLH QQQTLQQLQH QQHQFLLQQH DHDHVRAQSH PQSHFHIQQP QNSHASIVQP 1680 LIVQKPKGVV PLQPQVTKPP LGTVAHQRCM PYRHDQQQLG PALSLLSGNG DSGLSNIRGE 1740 ISNQHGEIGD HRSCISNGGA SKGCDFSRAD FHQLSASVQR VKPSHAAIPH RPSPTPAAVS 1800 AQGRPGDVKL FGQSLLSQPT SCAVSQSAAR ELVSAADRGS LQQSPASTAA SSSLTSMPVS 1860 AASATKSHGK ESAFRGVSFM PDGLQGGRSS RGNQGSLELW NNMSDVRSQA GPVSKSIDGD 1920 SDIRSMQECR MSREAQDVES DPSTLKLTHK LQHLDQARGV QEHSGSEGFS PVVHGVGKAR 1980 ACANEHGVGV GFAVSCGEVS RTDPERRGES IGIDLGCSER SSIMASRSNR GQVESFAMQA 2040 AGLLANGPQV HRNLIDYLMA ITELHQTRSL SSHSSVGQPR LEDHQWESLT RHPTNGTAVD 2100 ALKVNPTLGL GSPIAAPQTH LSGNDLFQQC VRDSSMYFSQ HYPSLAGHGV SSSAWNGGAG 2160 LVHPSEMQRV LVNPPLSSFL PGVFSRAPVT EDHLGSTETR DPERGGGGIC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-15 | 475 | 569 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-15 | 475 | 569 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10916 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390711.1 | 0.0 | uncharacterized protein LOC112289604 isoform X2 | ||||
TrEMBL | A0A2K1JRM0 | 0.0 | A0A2K1JRM0_PHYPA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 2e-34 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_21500V3.6.p |
Entrez Gene | 5932189 |
Publications ? help Back to Top | |||
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