PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_21500V3.4.p

Common Name

PHYPADRAFT_233852

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2548aa MW: 271366 Da PI: 6.2411

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_21500V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.7e-08	1103	1146	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ ++v+++G++ +++Ia ++g +++ qck ++ k Pp3c12_21500V3.4.p 1103 QWTDRERELFTEGVRLFGKD-FERIAVHVGSTKSVGQCKAFFCKT 1146 5***************99.*****99******99886 PP
2	Myb_DNA-binding	33.9	7.2e-11	1628	1669	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++d ++ +G++ W++ ++++ ++l q+k ++q+ Pp3c12_21500V3.4.p 1628 SWTQEEKEKFADIIRNHGKD-WTRLHECLP-SKSLTQIKTYFQN 1669 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.9E-13	840	903	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-4	849	896	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.276	852	903	IPR017884	SANT domain
SMART	SM00717	2.1E-7	853	901	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	17.617	1099	1151	IPR017884	SANT domain
SMART	SM00717	1.1E-8	1100	1149	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.47E-9	1103	1153	IPR009057	Homeodomain-like
Pfam	PF00249	9.1E-7	1103	1145	IPR001005	SANT/Myb domain
CDD	cd00167	1.48E-5	1104	1145	No hit	No description
SuperFamily	SSF46689	2.9E-10	1623	1673	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.542	1624	1675	IPR017884	SANT domain
SMART	SM00717	7.1E-9	1625	1673	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-7	1626	1670	IPR009057	Homeodomain-like
CDD	cd00167	2.29E-6	1628	1671	No hit	No description
Pfam	PF00249	3.3E-8	1628	1669	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2548 aa Download sequence Send to blast
MYSPGRGDAR ATALPNARDS STSMPIDHAS AWHREPYNRD ARLDRGDRER IIGGKREWNS 60 DRASFGAPYP RAFGGLHPVN GSLGPPNKRR LNGRHTGFHN EGGRYVSPGH RGEPPFGSVG 120 PVENGLGRKF DRESFYPGSG CPVGGSGFGN GVGVDQRAKE LEERHKKEPF LLLRDGRDGG 180 SCGGIEHGVR SFPSQAVCEA EKSCWERERS KGAVGNGWES SQKLQRDLRE RVGGKAEGYS 240 RREGKLSQHD GGREWSQADK ELEGRRVDGY GSSSRDGLTG DGVGGIKEAV GGCEWRRKER 300 SSSVSASRSG SYVASSGTAK GPVGRPQALD VSGSASSPQV SPHSTASPGV QEASRDDGSQ 360 PSPPKRPRLG WGQGLAKYEK KKVVETDEVG VSASGGSVSG RERSSVSGAT TEVVQTQESQ 420 AAEESPVSVV SNLSTLPPLT PSASPSQQAA EVVSKAMVEC DGVEQEVVGK VCERVAAEAE 480 AGGWISKPEG VVADDVEKRV EDGIDDGEAM DVDAAEVHPG RVDSRESGEA MQVACSGRNW 540 SGGEECGNGR WGSDGAGAAG NVGERVGGGV SEGGHGGSVD DGGVLEEGEL GEEKQEEWTS 600 KQMSVGLESE GNPAYSPRAE TEPAQREEMD VTAGVSKCGV AEKEEAERKV ISWDVEVVAR 660 SLMEENKKRA EQARETFVHL LREGVGVEGT LYRCPAEAGV WKENVERHYR NQERMLEKMG 720 ERRQSLRFAE QVLAMRFRAL KEAWKQEQVG MRQQQRGTKP VRRWEVEKRN GTALHCHRSS 780 LRLRPVQAGM EKVEAVSEEC MKKVMAKAVV GPVRGVLKMP SMIVGQENRL ARRFESKNAL 840 VEDPVGMERE RKSMNPWSWE EKRVFLEKFA VYNKNFSKIA SHLELKTTAD CVEFYYRNQK 900 SEDFERIRRR QQLKKRRDYS RVGGSFLSTG LQTSSQRREA NGHGRTEGAN VQTVGAVVGV 960 SHISVGTKAA RSSMQQKPVE RQRVSSALEP GSLPGAVEIG KGVSGKENKW CGTGGVSGSA 1020 AGRGGIFGMV LSGATVSCGL SSAVAGAVKI GRERSSVKTM VDAGLVVARC GQYEPNCFGA 1080 KGTRSIHPPL GLENFAKEEG DAQWTDRERE LFTEGVRLFG KDFERIAVHV GSTKSVGQCK 1140 AFFCKTRKRL GLDKLVEKYE DSLKVRYGGV MAESLECADV GRGEAAGMVA EDLRTSSLFE 1200 CSCPGMEVES HGDKGDENEK SVEAVVPVDV QEMEAVEVEA VEGVRVEGVV VEVQSVESEV 1260 VQDVAIADDA LVNGDVEPRG IEGFVAEDDA SQELMSKDEA IEKSVEDTGF EIAVVVASAA 1320 DADVDKASSN ASVEVTAFNE ALRDETVEDA AVEQVVVSEC LDAAAGILEN ENLAVEGSIV 1380 LEQVGTDGHP DEGRGVGGVA VETSNGVCEE GNGDAVGATS VVVISKDVLL GSFVCLKEDT 1440 AIVDSACPAD REPVASTPAV DASGAEDPVC VRTDAVNVPN DASVEAVKVD AAEDVFTGNK 1500 STDLAAGCTI REGDPADVVK VAESGLESSK CVAAVGVDKA VFPVTKMSTQ VADEPEAKAS 1560 PKVDVKSEPG SPQVATSVST DSASFTSAAA AVSHSGEPVF STTSSMQGRE KVGRVGGGET 1620 KSRREPTSWT QEEKEKFADI IRNHGKDWTR LHECLPSKSL TQIKTYFQNS KAKLGLLNAE 1680 GVNVPGGRVA GSRKRKVDEA ENGSNNVSCL SSGNELKGGG VSASDMDGVC QNVKAAVGGV 1740 PSMNPSMGMG SGPSGLESML YPFLGQRVED QIALQNFVRM YSANGLAQNI AGGVNPFVQQ 1800 YGFPMFPNAG HQRASQLSLQ QQLAASLAQK SGQAKGLQQQ ELQGFGSVQQ SGQASVQQKV 1860 AHQLQSAQMV RNQQLLASVM QHQAAAHHQQ NQTSKSVPHP LQPQVVVPQP GVAGQRQQHP 1920 QAQQGGSQQE QGSPGHPIGN PSLGVGNPTQ ASTQTKQLQQ PQVSLHQQQQ TLQQLQHQQH 1980 QFLLQQHDHD HVRAQSHPQS HFHIQQPQNS HASIVQPLIV QKPKGVVPLQ PQVTKPPLGT 2040 VAHQRCMPYR HDQQQLGPAL SLLSGNGDSG LSNIRGEISN QHGEIGDHRS CISNGGASKG 2100 CDFSRADFHQ LSASVQRVKP SHAAIPHRPS PTPAAVSAQG RPGDVKLFGQ SLLSQPTSCA 2160 VSQSAARELV SAADRGSLQQ SPASTAASSS LTSMPVSAAS ATKSHGKESA FRGVSFMPDG 2220 LQGGRSSRGN QGSLELWNNM SDVRSQAGPV SKSIDGDSDI RSMQECRMSR EAQDVESDPS 2280 TLKLTHKLQH LDQARGVQEH SGSEGFSPVV HGVGKARACA NEHGVGVGFA VSCGEVSRTD 2340 PERRGESIGI DLGCSERSSI MASRSNRGQV ESFAMQAAGL LANGPQVHRN LIDYLMAITE 2400 LHQTRSLSSH SSVGQPRLED HQWESLTRHP TNGTAVDALK VNPTLGLGSP IAAPQTHLSG 2460 NDLFQQCVRD SSMYFSQHYP SLAGHGVSSS AWNGGAGLVH PSEMQRVLVN PPLSSFLPGV 2520 FSRAPVTEDH LGSTETRDPE RGGGGIC*

Sequence ? help Back to Top

Protein Sequence Length: 2548 aa Download sequence Send to blast

MYSPGRGDAR ATALPNARDS STSMPIDHAS AWHREPYNRD ARLDRGDRER IIGGKREWNS  60
DRASFGAPYP RAFGGLHPVN GSLGPPNKRR LNGRHTGFHN EGGRYVSPGH RGEPPFGSVG  120
PVENGLGRKF DRESFYPGSG CPVGGSGFGN GVGVDQRAKE LEERHKKEPF LLLRDGRDGG  180
SCGGIEHGVR SFPSQAVCEA EKSCWERERS KGAVGNGWES SQKLQRDLRE RVGGKAEGYS  240
RREGKLSQHD GGREWSQADK ELEGRRVDGY GSSSRDGLTG DGVGGIKEAV GGCEWRRKER  300
SSSVSASRSG SYVASSGTAK GPVGRPQALD VSGSASSPQV SPHSTASPGV QEASRDDGSQ  360
PSPPKRPRLG WGQGLAKYEK KKVVETDEVG VSASGGSVSG RERSSVSGAT TEVVQTQESQ  420
AAEESPVSVV SNLSTLPPLT PSASPSQQAA EVVSKAMVEC DGVEQEVVGK VCERVAAEAE  480
AGGWISKPEG VVADDVEKRV EDGIDDGEAM DVDAAEVHPG RVDSRESGEA MQVACSGRNW  540
SGGEECGNGR WGSDGAGAAG NVGERVGGGV SEGGHGGSVD DGGVLEEGEL GEEKQEEWTS  600
KQMSVGLESE GNPAYSPRAE TEPAQREEMD VTAGVSKCGV AEKEEAERKV ISWDVEVVAR  660
SLMEENKKRA EQARETFVHL LREGVGVEGT LYRCPAEAGV WKENVERHYR NQERMLEKMG  720
ERRQSLRFAE QVLAMRFRAL KEAWKQEQVG MRQQQRGTKP VRRWEVEKRN GTALHCHRSS  780
LRLRPVQAGM EKVEAVSEEC MKKVMAKAVV GPVRGVLKMP SMIVGQENRL ARRFESKNAL  840
VEDPVGMERE RKSMNPWSWE EKRVFLEKFA VYNKNFSKIA SHLELKTTAD CVEFYYRNQK  900
SEDFERIRRR QQLKKRRDYS RVGGSFLSTG LQTSSQRREA NGHGRTEGAN VQTVGAVVGV  960
SHISVGTKAA RSSMQQKPVE RQRVSSALEP GSLPGAVEIG KGVSGKENKW CGTGGVSGSA  1020
AGRGGIFGMV LSGATVSCGL SSAVAGAVKI GRERSSVKTM VDAGLVVARC GQYEPNCFGA  1080
KGTRSIHPPL GLENFAKEEG DAQWTDRERE LFTEGVRLFG KDFERIAVHV GSTKSVGQCK  1140
AFFCKTRKRL GLDKLVEKYE DSLKVRYGGV MAESLECADV GRGEAAGMVA EDLRTSSLFE  1200
CSCPGMEVES HGDKGDENEK SVEAVVPVDV QEMEAVEVEA VEGVRVEGVV VEVQSVESEV  1260
VQDVAIADDA LVNGDVEPRG IEGFVAEDDA SQELMSKDEA IEKSVEDTGF EIAVVVASAA  1320
DADVDKASSN ASVEVTAFNE ALRDETVEDA AVEQVVVSEC LDAAAGILEN ENLAVEGSIV  1380
LEQVGTDGHP DEGRGVGGVA VETSNGVCEE GNGDAVGATS VVVISKDVLL GSFVCLKEDT  1440
AIVDSACPAD REPVASTPAV DASGAEDPVC VRTDAVNVPN DASVEAVKVD AAEDVFTGNK  1500
STDLAAGCTI REGDPADVVK VAESGLESSK CVAAVGVDKA VFPVTKMSTQ VADEPEAKAS  1560
PKVDVKSEPG SPQVATSVST DSASFTSAAA AVSHSGEPVF STTSSMQGRE KVGRVGGGET  1620
KSRREPTSWT QEEKEKFADI IRNHGKDWTR LHECLPSKSL TQIKTYFQNS KAKLGLLNAE  1680
GVNVPGGRVA GSRKRKVDEA ENGSNNVSCL SSGNELKGGG VSASDMDGVC QNVKAAVGGV  1740
PSMNPSMGMG SGPSGLESML YPFLGQRVED QIALQNFVRM YSANGLAQNI AGGVNPFVQQ  1800
YGFPMFPNAG HQRASQLSLQ QQLAASLAQK SGQAKGLQQQ ELQGFGSVQQ SGQASVQQKV  1860
AHQLQSAQMV RNQQLLASVM QHQAAAHHQQ NQTSKSVPHP LQPQVVVPQP GVAGQRQQHP  1920
QAQQGGSQQE QGSPGHPIGN PSLGVGNPTQ ASTQTKQLQQ PQVSLHQQQQ TLQQLQHQQH  1980
QFLLQQHDHD HVRAQSHPQS HFHIQQPQNS HASIVQPLIV QKPKGVVPLQ PQVTKPPLGT  2040
VAHQRCMPYR HDQQQLGPAL SLLSGNGDSG LSNIRGEISN QHGEIGDHRS CISNGGASKG  2100
CDFSRADFHQ LSASVQRVKP SHAAIPHRPS PTPAAVSAQG RPGDVKLFGQ SLLSQPTSCA  2160
VSQSAARELV SAADRGSLQQ SPASTAASSS LTSMPVSAAS ATKSHGKESA FRGVSFMPDG  2220
LQGGRSSRGN QGSLELWNNM SDVRSQAGPV SKSIDGDSDI RSMQECRMSR EAQDVESDPS  2280
TLKLTHKLQH LDQARGVQEH SGSEGFSPVV HGVGKARACA NEHGVGVGFA VSCGEVSRTD  2340
PERRGESIGI DLGCSERSSI MASRSNRGQV ESFAMQAAGL LANGPQVHRN LIDYLMAITE  2400
LHQTRSLSSH SSVGQPRLED HQWESLTRHP TNGTAVDALK VNPTLGLGSP IAAPQTHLSG  2460
NDLFQQCVRD SSMYFSQHYP SLAGHGVSSS AWNGGAGLVH PSEMQRVLVN PPLSSFLPGV  2520
FSRAPVTEDH LGSTETRDPE RGGGGIC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	811	905	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	811	905	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10916	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390710.1	0.0	uncharacterized protein LOC112289604 isoform X1
TrEMBL	A0A2K1JRM0	0.0	A0A2K1JRM0_PHYPA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-34	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c12_21500V3.4.p
Entrez Gene	5932189

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]