PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_21500V3.3.p

Common Name

PHYPADRAFT_233852

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2211aa MW: 235575 Da PI: 5.4326

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_21500V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	767	810	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ ++v+++G++ +++Ia ++g +++ qck ++ k Pp3c12_21500V3.3.p 767 QWTDRERELFTEGVRLFGKD-FERIAVHVGSTKSVGQCKAFFCKT 810 5***************99.*****99******99886 PP
2	Myb_DNA-binding	34.1	6.1e-11	1292	1333	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++d ++ +G++ W++ ++++ ++l q+k ++q+ Pp3c12_21500V3.3.p 1292 SWTQEEKEKFADIIRNHGKD-WTRLHECLP-SKSLTQIKTYFQN 1333 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.46E-13	504	567	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-4	513	560	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.276	516	567	IPR017884	SANT domain
SMART	SM00717	2.1E-7	517	565	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	17.617	763	815	IPR017884	SANT domain
SMART	SM00717	1.1E-8	764	813	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-7	767	809	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.09E-9	767	817	IPR009057	Homeodomain-like
CDD	cd00167	1.27E-5	768	809	No hit	No description
SuperFamily	SSF46689	2.48E-10	1287	1337	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.542	1288	1339	IPR017884	SANT domain
SMART	SM00717	7.1E-9	1289	1337	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-7	1290	1334	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-8	1292	1333	IPR001005	SANT/Myb domain
CDD	cd00167	1.96E-6	1292	1335	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2211 aa Download sequence Send to blast
MVECDGVEQE VVGKVCERVA AEAEAGGWIS KPEGVVADDV EKRGNMRAVT ECGLEESVRQ 60 GECCEALGLK ESMECQASPK VRGSVEHCGG VEVGGEVGVS DAGSRWAKED ILLRVEKVEY 120 EIEEVERELA KAEKVGSDRR AAGEWVAGVV GDEGSAGVDG VVKVEDGIDD GEAMDVDAAE 180 VHPGRVDSRE SGEAMQVACS GRNWSGGEEC GNGRWGSDGA GAAGNVGERV GGGVSEGGHG 240 GSVDDGGVLE EGELGEEKQE EWTSKQMSVG LESEGNPAYS PRAETEPAQR EEMDVTAGVS 300 KCGVAEKEEA ERKVISWDVE VVARSLMEEN KKRAEQARET FVHLLREGVG VEGTLYRCPA 360 EAGVWKENVE RHYRNQERML EKMGERRQSL RFAEQVLAMR FRALKEAWKQ EQVGMRQQQR 420 GTKPVRRWEV EKRNGTALHC HRSSLRLRPV QAGMEKVEAV SEECMKKVMA KAVVGPVRGV 480 LKMPSMIVGQ ENRLARRFES KNALVEDPVG MERERKSMNP WSWEEKRVFL EKFAVYNKNF 540 SKIASHLELK TTADCVEFYY RNQKSEDFER IRRRQQLKKR RDYSRVGGSF LSTGLQTSSQ 600 RREANGHGRT EGANVQTVGA VVGVSHISVG TKAARSSMQQ KPVERQRVSS ALEPGSLPGA 660 VEIGKGVSGK ENKWCGTGGV SGSAAGRGGI FGMVLSGATV SCGLSSAVAG AVKIGRERSS 720 VKTMVDAGLV VARCGQYEPN CFGAKGTRSI HPPLGLENFA KEEGDAQWTD RERELFTEGV 780 RLFGKDFERI AVHVGSTKSV GQCKAFFCKT RKRLGLDKLV EKYEDSLKVR YGGVMAESLE 840 CADVGRGEAA GMVAEDLRTS SLFECSCPGM EVESHGDKGD ENEKSVEAVV PVDVQEMEAV 900 EVEAVEGVRV EGVVVEVQSV ESEVVQDVAI ADDALVNGDV EPRGIEGFVA EDDASQELMS 960 KDEAIEKSVE DTGFEIAVVV ASAADADVDK ASSNASVEVT AFNEALRDET VEDAAVEQVV 1020 VSECLDAAAG ILENENLAVE GSIVLEQVGT DGHPDEGRGV GGVAVETSNG VCEEGNGDAV 1080 GATSVVVISK DVLLGSFVCL KEDTAIVDSA CPADREPVAS TPAVDASGAE DPVCVRTDAV 1140 NVPNDASVEA VKVDAAEDVF TGNKSTDLAA GCTIREGDPA DVVKVAESGL ESSKCVAAVG 1200 VDKAVFPVTK MSTQVADEPE AKASPKVDVK SEPGSPQVAT SVSTDSASFT SAAAAVSHSG 1260 EPVFSTTSSM QGREKVGRVG GGETKSRREP TSWTQEEKEK FADIIRNHGK DWTRLHECLP 1320 SKSLTQIKTY FQNSKAKLGL LNAEGVNVPG GRVAGSRKRK VDEAENGSNN VSCLSSGNEL 1380 KGGGVSASDM DGVCQNVKAA VGGVPSMNPS MGMGSGPSGL ESMLYPFLGQ RVEDQIALQN 1440 FVRMYSANGL AQNIAGGVNP FVQQYGFPMF PNAGHQRASQ LSLQQQLAAS LAQKSGQAKG 1500 LQQQELQGFG SVQQSGQASV QQKVAHQLQS AQMVRNQQLL ASVMQHQAAA HHQQNQTSKS 1560 VPHPLQPQVV VPQPGVAGQR QQHPQAQQGG SQQEQGSPGH PIGNPSLGVG NPTQASTQTK 1620 QLQQPQVSLH QQQTLQQLQH QQHQFLLQQH DHDHVRAQSH PQSHFHIQQP QNSHASIVQP 1680 LIVQKPKGVV PLQPQVTKPP LGTVAHQRCM PYRHDQQQLG PALSLLSGNG DSGLSNIRGE 1740 ISNQHGEIGD HRSCISNGGA SKGCDFSRAD FHQLSASVQR VKPSHAAIPH RPSPTPAAVS 1800 AQGRPGDVKL FGQSLLSQPT SCAVSQSAAR ELVSAADRGS LQQSPASTAA SSSLTSMPVS 1860 AASATKSHGK ESAFRGVSFM PDGLQGGRSS RGNQGSLELW NNMSDVRSQA GPVSKSIDGD 1920 SDIRSMQECR MSREAQDVES DPSTLKLTHK LQHLDQARGV QEHSGSEGFS PVVHGVGKAR 1980 ACANEHGVGV GFAVSCGEVS RTDPERRGES IGIDLGCSER SSIMASRSNR GQVESFAMQA 2040 AGLLANGPQV HRNLIDYLMA ITELHQTRSL SSHSSVGQPR LEDHQWESLT RHPTNGTAVD 2100 ALKVNPTLGL GSPIAAPQTH LSGNDLFQQC VRDSSMYFSQ HYPSLAGHGV SSSAWNGGAG 2160 LVHPSEMQRV LVNPPLSSFL PGVFSRAPVT EDHLGSTETR DPERGGGGIC *

Sequence ? help Back to Top

Protein Sequence Length: 2211 aa Download sequence Send to blast

MVECDGVEQE VVGKVCERVA AEAEAGGWIS KPEGVVADDV EKRGNMRAVT ECGLEESVRQ  60
GECCEALGLK ESMECQASPK VRGSVEHCGG VEVGGEVGVS DAGSRWAKED ILLRVEKVEY  120
EIEEVERELA KAEKVGSDRR AAGEWVAGVV GDEGSAGVDG VVKVEDGIDD GEAMDVDAAE  180
VHPGRVDSRE SGEAMQVACS GRNWSGGEEC GNGRWGSDGA GAAGNVGERV GGGVSEGGHG  240
GSVDDGGVLE EGELGEEKQE EWTSKQMSVG LESEGNPAYS PRAETEPAQR EEMDVTAGVS  300
KCGVAEKEEA ERKVISWDVE VVARSLMEEN KKRAEQARET FVHLLREGVG VEGTLYRCPA  360
EAGVWKENVE RHYRNQERML EKMGERRQSL RFAEQVLAMR FRALKEAWKQ EQVGMRQQQR  420
GTKPVRRWEV EKRNGTALHC HRSSLRLRPV QAGMEKVEAV SEECMKKVMA KAVVGPVRGV  480
LKMPSMIVGQ ENRLARRFES KNALVEDPVG MERERKSMNP WSWEEKRVFL EKFAVYNKNF  540
SKIASHLELK TTADCVEFYY RNQKSEDFER IRRRQQLKKR RDYSRVGGSF LSTGLQTSSQ  600
RREANGHGRT EGANVQTVGA VVGVSHISVG TKAARSSMQQ KPVERQRVSS ALEPGSLPGA  660
VEIGKGVSGK ENKWCGTGGV SGSAAGRGGI FGMVLSGATV SCGLSSAVAG AVKIGRERSS  720
VKTMVDAGLV VARCGQYEPN CFGAKGTRSI HPPLGLENFA KEEGDAQWTD RERELFTEGV  780
RLFGKDFERI AVHVGSTKSV GQCKAFFCKT RKRLGLDKLV EKYEDSLKVR YGGVMAESLE  840
CADVGRGEAA GMVAEDLRTS SLFECSCPGM EVESHGDKGD ENEKSVEAVV PVDVQEMEAV  900
EVEAVEGVRV EGVVVEVQSV ESEVVQDVAI ADDALVNGDV EPRGIEGFVA EDDASQELMS  960
KDEAIEKSVE DTGFEIAVVV ASAADADVDK ASSNASVEVT AFNEALRDET VEDAAVEQVV  1020
VSECLDAAAG ILENENLAVE GSIVLEQVGT DGHPDEGRGV GGVAVETSNG VCEEGNGDAV  1080
GATSVVVISK DVLLGSFVCL KEDTAIVDSA CPADREPVAS TPAVDASGAE DPVCVRTDAV  1140
NVPNDASVEA VKVDAAEDVF TGNKSTDLAA GCTIREGDPA DVVKVAESGL ESSKCVAAVG  1200
VDKAVFPVTK MSTQVADEPE AKASPKVDVK SEPGSPQVAT SVSTDSASFT SAAAAVSHSG  1260
EPVFSTTSSM QGREKVGRVG GGETKSRREP TSWTQEEKEK FADIIRNHGK DWTRLHECLP  1320
SKSLTQIKTY FQNSKAKLGL LNAEGVNVPG GRVAGSRKRK VDEAENGSNN VSCLSSGNEL  1380
KGGGVSASDM DGVCQNVKAA VGGVPSMNPS MGMGSGPSGL ESMLYPFLGQ RVEDQIALQN  1440
FVRMYSANGL AQNIAGGVNP FVQQYGFPMF PNAGHQRASQ LSLQQQLAAS LAQKSGQAKG  1500
LQQQELQGFG SVQQSGQASV QQKVAHQLQS AQMVRNQQLL ASVMQHQAAA HHQQNQTSKS  1560
VPHPLQPQVV VPQPGVAGQR QQHPQAQQGG SQQEQGSPGH PIGNPSLGVG NPTQASTQTK  1620
QLQQPQVSLH QQQTLQQLQH QQHQFLLQQH DHDHVRAQSH PQSHFHIQQP QNSHASIVQP  1680
LIVQKPKGVV PLQPQVTKPP LGTVAHQRCM PYRHDQQQLG PALSLLSGNG DSGLSNIRGE  1740
ISNQHGEIGD HRSCISNGGA SKGCDFSRAD FHQLSASVQR VKPSHAAIPH RPSPTPAAVS  1800
AQGRPGDVKL FGQSLLSQPT SCAVSQSAAR ELVSAADRGS LQQSPASTAA SSSLTSMPVS  1860
AASATKSHGK ESAFRGVSFM PDGLQGGRSS RGNQGSLELW NNMSDVRSQA GPVSKSIDGD  1920
SDIRSMQECR MSREAQDVES DPSTLKLTHK LQHLDQARGV QEHSGSEGFS PVVHGVGKAR  1980
ACANEHGVGV GFAVSCGEVS RTDPERRGES IGIDLGCSER SSIMASRSNR GQVESFAMQA  2040
AGLLANGPQV HRNLIDYLMA ITELHQTRSL SSHSSVGQPR LEDHQWESLT RHPTNGTAVD  2100
ALKVNPTLGL GSPIAAPQTH LSGNDLFQQC VRDSSMYFSQ HYPSLAGHGV SSSAWNGGAG  2160
LVHPSEMQRV LVNPPLSSFL PGVFSRAPVT EDHLGSTETR DPERGGGGIC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	475	569	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	475	569	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10916	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390711.1	0.0	uncharacterized protein LOC112289604 isoform X2
TrEMBL	A0A2K1JRM0	0.0	A0A2K1JRM0_PHYPA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-34	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c12_21500V3.3.p
Entrez Gene	5932189

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]