PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_21500V3.2.p

Common Name

PHYPADRAFT_233852

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2613aa MW: 278090 Da PI: 6.1604

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_21500V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.7e-08	1169	1212	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ ++v+++G++ +++Ia ++g +++ qck ++ k Pp3c12_21500V3.2.p 1169 QWTDRERELFTEGVRLFGKD-FERIAVHVGSTKSVGQCKAFFCKT 1212 5***************99.*****99******99886 PP
2	Myb_DNA-binding	33.9	7.4e-11	1694	1735	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++d ++ +G++ W++ ++++ ++l q+k ++q+ Pp3c12_21500V3.2.p 1694 SWTQEEKEKFADIIRNHGKD-WTRLHECLP-SKSLTQIKTYFQN 1735 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.9E-13	906	969	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-4	915	962	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.276	918	969	IPR017884	SANT domain
SMART	SM00717	2.1E-7	919	967	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	17.617	1165	1217	IPR017884	SANT domain
SMART	SM00717	1.1E-8	1166	1215	IPR001005	SANT/Myb domain
Pfam	PF00249	9.4E-7	1169	1211	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.54E-9	1169	1219	IPR009057	Homeodomain-like
CDD	cd00167	1.52E-5	1170	1211	No hit	No description
SuperFamily	SSF46689	2.97E-10	1689	1739	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.542	1690	1741	IPR017884	SANT domain
SMART	SM00717	7.1E-9	1691	1739	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-7	1692	1736	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-8	1694	1735	IPR001005	SANT/Myb domain
CDD	cd00167	2.35E-6	1694	1737	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2613 aa Download sequence Send to blast
MYSPGRGDAR ATALPNARDS STSMPIDHAS AWHREPYNRD ARLDRGDRER IIGGKREWNS 60 DRASFGAPYP RAFGGLHPVN GSLGPPNKRR LNGRHTGFHN EGGRYVSPGH RGEPPFGSVG 120 PVENGLGRKF DRESFYPGSG CPVGGSGFGN GVGVDQRAKE LEERHKKEPF LLLRDGRDGG 180 SCGGIEHGVR SFPSQAVCEA EKSCWERERS KGAVGNGWES SQKLQRDLRE RVGGKAEGYS 240 RREGKLSQHD GGREWSQADK ELEGRRVDGY GSSSRDGLTG DGVGGIKEAV GGCEWRRKER 300 SSSVSASRSG SYVASSGTAK GPVGRPQALD VSGSASSPQV SPHSTASPGV QEASRDDGSQ 360 PSPPKRPRLG WGQGLAKYEK KKVVETDEVG VSASGGSVSG RERSSVSGAT TEVVQTQESQ 420 AAEESPVSVV SNLSTLPPLT PSASPSQQAA EVVSKAMVEC DGVEQEVVGK VCERVAAEAE 480 AGGWISKPEG VVADDVEKRG NMRAVTECGL EESVRQGECC EALGLKESME CQASPKVRGS 540 VEHCGGVEVG GEVGVSDAGS RWAKEDILLR VEKVEYEIEE VERELAKAEK VGSDRRAAGE 600 WVAGVVGDEG SAGVDGVVKV EDGIDDGEAM DVDAAEVHPG RVDSRESGEA MQVACSGRNW 660 SGGEECGNGR WGSDGAGAAG NVGERVGGGV SEGGHGGSVD DGGVLEEEKE EAERKVISWD 720 VEVVARSLME ENKKRAEQAR ETFVHLLREG VGVEGTLYRC PAEAGVWKEN VERHYRNQER 780 MLEKMGERRQ SLRFAEQVLA MRFRALKEAW KQEQVGMRQQ QRGTKPVRRW EVEKRNGTAL 840 HCHRSSLRLR PVQAGMEKVE AVSEECMKKV MAKAVVGPVR GVLKMPSMIV GQENRLARRF 900 ESKNALVEDP VGMERERKSM NPWSWEEKRV FLEKFAVYNK NFSKIASHLE LKTTADCVEF 960 YYRNQKSEDF ERIRRRQQLK KRRDYSRVGG SFLSTGLQTS SQRREANGHG RTEGANVQTV 1020 GAVVGVSHIS VGTKAARSSM QQKPVERQRV SSALEPGSLP GAVEIGKGVS GKENKWCGTG 1080 GVSGSAAGRG GIFGMVLSGA TVSCGLSSAV AGAVKIGRER SSVKTMVDAG LVVARCGQYE 1140 PNCFGAKGTR SIHPPLGLEN FAKEEGDAQW TDRERELFTE GVRLFGKDFE RIAVHVGSTK 1200 SVGQCKAFFC KTRKRLGLDK LVEKYEDSLK VRYGGVMAES LECADVGRGE AAGMVAEDLR 1260 TSSLFECSCP GMEVESHGDK GDENEKSVEA VVPVDVQEME AVEVEAVEGV RVEGVVVEVQ 1320 SVESEVVQDV AIADDALVNG DVEPRGIEGF VAEDDASQEL MSKDEAIEKS VEDTGFEIAV 1380 VVASAADADV DKASSNASVE VTAFNEALRD ETVEDAAVEQ VVVSECLDAA AGILENENLA 1440 VEGSIVLEQV GTDGHPDEGR GVGGVAVETS NGVCEEGNGD AVGATSVVVI SKDVLLGSFV 1500 CLKEDTAIVD SACPADREPV ASTPAVDASG AEDPVCVRTD AVNVPNDASV EAVKVDAAED 1560 VFTGNKSTDL AAGCTIREGD PADVVKVAES GLESSKCVAA VGVDKAVFPV TKMSTQVADE 1620 PEAKASPKVD VKSEPGSPQV ATSVSTDSAS FTSAAAAVSH SGEPVFSTTS SMQGREKVGR 1680 VGGGETKSRR EPTSWTQEEK EKFADIIRNH GKDWTRLHEC LPSKSLTQIK TYFQNSKAKL 1740 GLLNAEGVNV PGGRVAGSRK RKVDEAENGS NNVSCLSSGN ELKGGGVSAS DMDGVCQNVK 1800 AAVGGVPSMN PSMGMGSGPS GLESMLYPFL GQRVEDQIAL QNFVRMYSAN GLAQNIAGGV 1860 NPFVQQYGFP MFPNAGHQRA SQLSLQQQLA ASLAQKSGQA KGLQQQELQG FGSVQQSGQA 1920 SVQQKVAHQL QSAQMVRNQQ LLASVMQHQA AAHHQQNQTS KSVPHPLQPQ VVVPQPGVAG 1980 QRQQHPQAQQ GGSQQEQGSP GHPIGNPSLG VGNPTQASTQ TKQLQQPQVS LHQQQTLQQL 2040 QHQQHQFLLQ QHDHDHVRAQ SHPQSHFHIQ QPQNSHASIV QPLIVQKPKG VVPLQPQVTK 2100 PPLGTVAHQR CMPYRHDQQQ LGPALSLLSG NGDSGLSNIR GEISNQHGEI GDHRSCISNG 2160 GASKGCDFSR ADFHQLSASV QRVKPSHAAI PHRPSPTPAA VSAQGRPGDV KLFGQSLLSQ 2220 PTSCAVSQSA ARELVSAADR GSLQQSPAST AASSSLTSMP VSAASATKSH GKESAFRGVS 2280 FMPDGLQGGR SSRGNQGSLE LWNNMSDVRS QAGPVSKSID GDSDIRSMQE CRMSREAQDV 2340 ESDPSTLKLT HKLQHLDQAR GVQEHSGSEG FSPVVHGVGK ARACANEHGV GVGFAVSCGE 2400 VSRTDPERRG ESIGIDLGCS ERSSIMASRS NRGQVESFAM QAAGLLANGP QVHRNLIDYL 2460 MAITELHQTR SLSSHSSVGQ PRLEDHQWES LTRHPTNGTA VDALKVNPTL GLGSPIAAPQ 2520 THLSGNDLFQ QCVRDSSMYF SQHYPSLAGH GVSSSAWNGG AGLVHPSEMQ RVLVNPPLSS 2580 FLPGVFSRAP VTEDHLGSTE TRDPERGGGG IC*

Sequence ? help Back to Top

Protein Sequence Length: 2613 aa Download sequence Send to blast

MYSPGRGDAR ATALPNARDS STSMPIDHAS AWHREPYNRD ARLDRGDRER IIGGKREWNS  60
DRASFGAPYP RAFGGLHPVN GSLGPPNKRR LNGRHTGFHN EGGRYVSPGH RGEPPFGSVG  120
PVENGLGRKF DRESFYPGSG CPVGGSGFGN GVGVDQRAKE LEERHKKEPF LLLRDGRDGG  180
SCGGIEHGVR SFPSQAVCEA EKSCWERERS KGAVGNGWES SQKLQRDLRE RVGGKAEGYS  240
RREGKLSQHD GGREWSQADK ELEGRRVDGY GSSSRDGLTG DGVGGIKEAV GGCEWRRKER  300
SSSVSASRSG SYVASSGTAK GPVGRPQALD VSGSASSPQV SPHSTASPGV QEASRDDGSQ  360
PSPPKRPRLG WGQGLAKYEK KKVVETDEVG VSASGGSVSG RERSSVSGAT TEVVQTQESQ  420
AAEESPVSVV SNLSTLPPLT PSASPSQQAA EVVSKAMVEC DGVEQEVVGK VCERVAAEAE  480
AGGWISKPEG VVADDVEKRG NMRAVTECGL EESVRQGECC EALGLKESME CQASPKVRGS  540
VEHCGGVEVG GEVGVSDAGS RWAKEDILLR VEKVEYEIEE VERELAKAEK VGSDRRAAGE  600
WVAGVVGDEG SAGVDGVVKV EDGIDDGEAM DVDAAEVHPG RVDSRESGEA MQVACSGRNW  660
SGGEECGNGR WGSDGAGAAG NVGERVGGGV SEGGHGGSVD DGGVLEEEKE EAERKVISWD  720
VEVVARSLME ENKKRAEQAR ETFVHLLREG VGVEGTLYRC PAEAGVWKEN VERHYRNQER  780
MLEKMGERRQ SLRFAEQVLA MRFRALKEAW KQEQVGMRQQ QRGTKPVRRW EVEKRNGTAL  840
HCHRSSLRLR PVQAGMEKVE AVSEECMKKV MAKAVVGPVR GVLKMPSMIV GQENRLARRF  900
ESKNALVEDP VGMERERKSM NPWSWEEKRV FLEKFAVYNK NFSKIASHLE LKTTADCVEF  960
YYRNQKSEDF ERIRRRQQLK KRRDYSRVGG SFLSTGLQTS SQRREANGHG RTEGANVQTV  1020
GAVVGVSHIS VGTKAARSSM QQKPVERQRV SSALEPGSLP GAVEIGKGVS GKENKWCGTG  1080
GVSGSAAGRG GIFGMVLSGA TVSCGLSSAV AGAVKIGRER SSVKTMVDAG LVVARCGQYE  1140
PNCFGAKGTR SIHPPLGLEN FAKEEGDAQW TDRERELFTE GVRLFGKDFE RIAVHVGSTK  1200
SVGQCKAFFC KTRKRLGLDK LVEKYEDSLK VRYGGVMAES LECADVGRGE AAGMVAEDLR  1260
TSSLFECSCP GMEVESHGDK GDENEKSVEA VVPVDVQEME AVEVEAVEGV RVEGVVVEVQ  1320
SVESEVVQDV AIADDALVNG DVEPRGIEGF VAEDDASQEL MSKDEAIEKS VEDTGFEIAV  1380
VVASAADADV DKASSNASVE VTAFNEALRD ETVEDAAVEQ VVVSECLDAA AGILENENLA  1440
VEGSIVLEQV GTDGHPDEGR GVGGVAVETS NGVCEEGNGD AVGATSVVVI SKDVLLGSFV  1500
CLKEDTAIVD SACPADREPV ASTPAVDASG AEDPVCVRTD AVNVPNDASV EAVKVDAAED  1560
VFTGNKSTDL AAGCTIREGD PADVVKVAES GLESSKCVAA VGVDKAVFPV TKMSTQVADE  1620
PEAKASPKVD VKSEPGSPQV ATSVSTDSAS FTSAAAAVSH SGEPVFSTTS SMQGREKVGR  1680
VGGGETKSRR EPTSWTQEEK EKFADIIRNH GKDWTRLHEC LPSKSLTQIK TYFQNSKAKL  1740
GLLNAEGVNV PGGRVAGSRK RKVDEAENGS NNVSCLSSGN ELKGGGVSAS DMDGVCQNVK  1800
AAVGGVPSMN PSMGMGSGPS GLESMLYPFL GQRVEDQIAL QNFVRMYSAN GLAQNIAGGV  1860
NPFVQQYGFP MFPNAGHQRA SQLSLQQQLA ASLAQKSGQA KGLQQQELQG FGSVQQSGQA  1920
SVQQKVAHQL QSAQMVRNQQ LLASVMQHQA AAHHQQNQTS KSVPHPLQPQ VVVPQPGVAG  1980
QRQQHPQAQQ GGSQQEQGSP GHPIGNPSLG VGNPTQASTQ TKQLQQPQVS LHQQQTLQQL  2040
QHQQHQFLLQ QHDHDHVRAQ SHPQSHFHIQ QPQNSHASIV QPLIVQKPKG VVPLQPQVTK  2100
PPLGTVAHQR CMPYRHDQQQ LGPALSLLSG NGDSGLSNIR GEISNQHGEI GDHRSCISNG  2160
GASKGCDFSR ADFHQLSASV QRVKPSHAAI PHRPSPTPAA VSAQGRPGDV KLFGQSLLSQ  2220
PTSCAVSQSA ARELVSAADR GSLQQSPAST AASSSLTSMP VSAASATKSH GKESAFRGVS  2280
FMPDGLQGGR SSRGNQGSLE LWNNMSDVRS QAGPVSKSID GDSDIRSMQE CRMSREAQDV  2340
ESDPSTLKLT HKLQHLDQAR GVQEHSGSEG FSPVVHGVGK ARACANEHGV GVGFAVSCGE  2400
VSRTDPERRG ESIGIDLGCS ERSSIMASRS NRGQVESFAM QAAGLLANGP QVHRNLIDYL  2460
MAITELHQTR SLSSHSSVGQ PRLEDHQWES LTRHPTNGTA VDALKVNPTL GLGSPIAAPQ  2520
THLSGNDLFQ QCVRDSSMYF SQHYPSLAGH GVSSSAWNGG AGLVHPSEMQ RVLVNPPLSS  2580
FLPGVFSRAP VTEDHLGSTE TRDPERGGGG IC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	877	971	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	877	971	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10916	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390712.1	0.0	uncharacterized protein LOC112289604 isoform X3
TrEMBL	A9SRK8	0.0	A9SRK8_PHYPA; Predicted protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-34	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c12_21500V3.2.p
Entrez Gene	5932189

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]