PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_21500V3.1.p

Common Name

PHYPADRAFT_233852

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2667aa MW: 283886 Da PI: 5.9829

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_21500V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	2.8e-08	1223	1266	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ ++v+++G++ +++Ia ++g +++ qck ++ k Pp3c12_21500V3.1.p 1223 QWTDRERELFTEGVRLFGKD-FERIAVHVGSTKSVGQCKAFFCKT 1266 5***************99.*****99******99886 PP
2	Myb_DNA-binding	33.9	7.5e-11	1748	1789	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++d ++ +G++ W++ ++++ ++l q+k ++q+ Pp3c12_21500V3.1.p 1748 SWTQEEKEKFADIIRNHGKD-WTRLHECLP-SKSLTQIKTYFQN 1789 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.9E-13	960	1023	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-4	969	1016	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.276	972	1023	IPR017884	SANT domain
SMART	SM00717	2.1E-7	973	1021	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	17.617	1219	1271	IPR017884	SANT domain
SMART	SM00717	1.1E-8	1220	1269	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-7	1223	1265	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.62E-9	1223	1273	IPR009057	Homeodomain-like
CDD	cd00167	1.56E-5	1224	1265	No hit	No description
SuperFamily	SSF46689	3.04E-10	1743	1793	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.542	1744	1795	IPR017884	SANT domain
SMART	SM00717	7.1E-9	1745	1793	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-7	1746	1790	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-8	1748	1789	IPR001005	SANT/Myb domain
CDD	cd00167	2.41E-6	1748	1791	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2667 aa Download sequence Send to blast
MYSPGRGDAR ATALPNARDS STSMPIDHAS AWHREPYNRD ARLDRGDRER IIGGKREWNS 60 DRASFGAPYP RAFGGLHPVN GSLGPPNKRR LNGRHTGFHN EGGRYVSPGH RGEPPFGSVG 120 PVENGLGRKF DRESFYPGSG CPVGGSGFGN GVGVDQRAKE LEERHKKEPF LLLRDGRDGG 180 SCGGIEHGVR SFPSQAVCEA EKSCWERERS KGAVGNGWES SQKLQRDLRE RVGGKAEGYS 240 RREGKLSQHD GGREWSQADK ELEGRRVDGY GSSSRDGLTG DGVGGIKEAV GGCEWRRKER 300 SSSVSASRSG SYVASSGTAK GPVGRPQALD VSGSASSPQV SPHSTASPGV QEASRDDGSQ 360 PSPPKRPRLG WGQGLAKYEK KKVVETDEVG VSASGGSVSG RERSSVSGAT TEVVQTQESQ 420 AAEESPVSVV SNLSTLPPLT PSASPSQQAA EVVSKAMVEC DGVEQEVVGK VCERVAAEAE 480 AGGWISKPEG VVADDVEKRG NMRAVTECGL EESVRQGECC EALGLKESME CQASPKVRGS 540 VEHCGGVEVG GEVGVSDAGS RWAKEDILLR VEKVEYEIEE VERELAKAEK VGSDRRAAGE 600 WVAGVVGDEG SAGVDGVVKV EDGIDDGEAM DVDAAEVHPG RVDSRESGEA MQVACSGRNW 660 SGGEECGNGR WGSDGAGAAG NVGERVGGGV SEGGHGGSVD DGGVLEEGEL GEEKQEEWTS 720 KQMSVGLESE GNPAYSPRAE TEPAQREEMD VTAGVSKCGV AEKEEAERKV ISWDVEVVAR 780 SLMEENKKRA EQARETFVHL LREGVGVEGT LYRCPAEAGV WKENVERHYR NQERMLEKMG 840 ERRQSLRFAE QVLAMRFRAL KEAWKQEQVG MRQQQRGTKP VRRWEVEKRN GTALHCHRSS 900 LRLRPVQAGM EKVEAVSEEC MKKVMAKAVV GPVRGVLKMP SMIVGQENRL ARRFESKNAL 960 VEDPVGMERE RKSMNPWSWE EKRVFLEKFA VYNKNFSKIA SHLELKTTAD CVEFYYRNQK 1020 SEDFERIRRR QQLKKRRDYS RVGGSFLSTG LQTSSQRREA NGHGRTEGAN VQTVGAVVGV 1080 SHISVGTKAA RSSMQQKPVE RQRVSSALEP GSLPGAVEIG KGVSGKENKW CGTGGVSGSA 1140 AGRGGIFGMV LSGATVSCGL SSAVAGAVKI GRERSSVKTM VDAGLVVARC GQYEPNCFGA 1200 KGTRSIHPPL GLENFAKEEG DAQWTDRERE LFTEGVRLFG KDFERIAVHV GSTKSVGQCK 1260 AFFCKTRKRL GLDKLVEKYE DSLKVRYGGV MAESLECADV GRGEAAGMVA EDLRTSSLFE 1320 CSCPGMEVES HGDKGDENEK SVEAVVPVDV QEMEAVEVEA VEGVRVEGVV VEVQSVESEV 1380 VQDVAIADDA LVNGDVEPRG IEGFVAEDDA SQELMSKDEA IEKSVEDTGF EIAVVVASAA 1440 DADVDKASSN ASVEVTAFNE ALRDETVEDA AVEQVVVSEC LDAAAGILEN ENLAVEGSIV 1500 LEQVGTDGHP DEGRGVGGVA VETSNGVCEE GNGDAVGATS VVVISKDVLL GSFVCLKEDT 1560 AIVDSACPAD REPVASTPAV DASGAEDPVC VRTDAVNVPN DASVEAVKVD AAEDVFTGNK 1620 STDLAAGCTI REGDPADVVK VAESGLESSK CVAAVGVDKA VFPVTKMSTQ VADEPEAKAS 1680 PKVDVKSEPG SPQVATSVST DSASFTSAAA AVSHSGEPVF STTSSMQGRE KVGRVGGGET 1740 KSRREPTSWT QEEKEKFADI IRNHGKDWTR LHECLPSKSL TQIKTYFQNS KAKLGLLNAE 1800 GVNVPGGRVA GSRKRKVDEA ENGSNNVSCL SSGNELKGGG VSASDMDGVC QNVKAAVGGV 1860 PSMNPSMGMG SGPSGLESML YPFLGQRVED QIALQNFVRM YSANGLAQNI AGGVNPFVQQ 1920 YGFPMFPNAG HQRASQLSLQ QQLAASLAQK SGQAKGLQQQ ELQGFGSVQQ SGQASVQQKV 1980 AHQLQSAQMV RNQQLLASVM QHQAAAHHQQ NQTSKSVPHP LQPQVVVPQP GVAGQRQQHP 2040 QAQQGGSQQE QGSPGHPIGN PSLGVGNPTQ ASTQTKQLQQ PQVSLHQQQT LQQLQHQQHQ 2100 FLLQQHDHDH VRAQSHPQSH FHIQQPQNSH ASIVQPLIVQ KPKGVVPLQP QVTKPPLGTV 2160 AHQRCMPYRH DQQQLGPALS LLSGNGDSGL SNIRGEISNQ HGEIGDHRSC ISNGGASKGC 2220 DFSRADFHQL SASVQRVKPS HAAIPHRPSP TPAAVSAQGR PGDVKLFGQS LLSQPTSCAV 2280 SQSAARELVS AADRGSLQQS PASTAASSSL TSMPVSAASA TKSHGKESAF RGVSFMPDGL 2340 QGGRSSRGNQ GSLELWNNMS DVRSQAGPVS KSIDGDSDIR SMQECRMSRE AQDVESDPST 2400 LKLTHKLQHL DQARGVQEHS GSEGFSPVVH GVGKARACAN EHGVGVGFAV SCGEVSRTDP 2460 ERRGESIGID LGCSERSSIM ASRSNRGQVE SFAMQAAGLL ANGPQVHRNL IDYLMAITEL 2520 HQTRSLSSHS SVGQPRLEDH QWESLTRHPT NGTAVDALKV NPTLGLGSPI AAPQTHLSGN 2580 DLFQQCVRDS SMYFSQHYPS LAGHGVSSSA WNGGAGLVHP SEMQRVLVNP PLSSFLPGVF 2640 SRAPVTEDHL GSTETRDPER GGGGIC*

Sequence ? help Back to Top

Protein Sequence Length: 2667 aa Download sequence Send to blast

MYSPGRGDAR ATALPNARDS STSMPIDHAS AWHREPYNRD ARLDRGDRER IIGGKREWNS  60
DRASFGAPYP RAFGGLHPVN GSLGPPNKRR LNGRHTGFHN EGGRYVSPGH RGEPPFGSVG  120
PVENGLGRKF DRESFYPGSG CPVGGSGFGN GVGVDQRAKE LEERHKKEPF LLLRDGRDGG  180
SCGGIEHGVR SFPSQAVCEA EKSCWERERS KGAVGNGWES SQKLQRDLRE RVGGKAEGYS  240
RREGKLSQHD GGREWSQADK ELEGRRVDGY GSSSRDGLTG DGVGGIKEAV GGCEWRRKER  300
SSSVSASRSG SYVASSGTAK GPVGRPQALD VSGSASSPQV SPHSTASPGV QEASRDDGSQ  360
PSPPKRPRLG WGQGLAKYEK KKVVETDEVG VSASGGSVSG RERSSVSGAT TEVVQTQESQ  420
AAEESPVSVV SNLSTLPPLT PSASPSQQAA EVVSKAMVEC DGVEQEVVGK VCERVAAEAE  480
AGGWISKPEG VVADDVEKRG NMRAVTECGL EESVRQGECC EALGLKESME CQASPKVRGS  540
VEHCGGVEVG GEVGVSDAGS RWAKEDILLR VEKVEYEIEE VERELAKAEK VGSDRRAAGE  600
WVAGVVGDEG SAGVDGVVKV EDGIDDGEAM DVDAAEVHPG RVDSRESGEA MQVACSGRNW  660
SGGEECGNGR WGSDGAGAAG NVGERVGGGV SEGGHGGSVD DGGVLEEGEL GEEKQEEWTS  720
KQMSVGLESE GNPAYSPRAE TEPAQREEMD VTAGVSKCGV AEKEEAERKV ISWDVEVVAR  780
SLMEENKKRA EQARETFVHL LREGVGVEGT LYRCPAEAGV WKENVERHYR NQERMLEKMG  840
ERRQSLRFAE QVLAMRFRAL KEAWKQEQVG MRQQQRGTKP VRRWEVEKRN GTALHCHRSS  900
LRLRPVQAGM EKVEAVSEEC MKKVMAKAVV GPVRGVLKMP SMIVGQENRL ARRFESKNAL  960
VEDPVGMERE RKSMNPWSWE EKRVFLEKFA VYNKNFSKIA SHLELKTTAD CVEFYYRNQK  1020
SEDFERIRRR QQLKKRRDYS RVGGSFLSTG LQTSSQRREA NGHGRTEGAN VQTVGAVVGV  1080
SHISVGTKAA RSSMQQKPVE RQRVSSALEP GSLPGAVEIG KGVSGKENKW CGTGGVSGSA  1140
AGRGGIFGMV LSGATVSCGL SSAVAGAVKI GRERSSVKTM VDAGLVVARC GQYEPNCFGA  1200
KGTRSIHPPL GLENFAKEEG DAQWTDRERE LFTEGVRLFG KDFERIAVHV GSTKSVGQCK  1260
AFFCKTRKRL GLDKLVEKYE DSLKVRYGGV MAESLECADV GRGEAAGMVA EDLRTSSLFE  1320
CSCPGMEVES HGDKGDENEK SVEAVVPVDV QEMEAVEVEA VEGVRVEGVV VEVQSVESEV  1380
VQDVAIADDA LVNGDVEPRG IEGFVAEDDA SQELMSKDEA IEKSVEDTGF EIAVVVASAA  1440
DADVDKASSN ASVEVTAFNE ALRDETVEDA AVEQVVVSEC LDAAAGILEN ENLAVEGSIV  1500
LEQVGTDGHP DEGRGVGGVA VETSNGVCEE GNGDAVGATS VVVISKDVLL GSFVCLKEDT  1560
AIVDSACPAD REPVASTPAV DASGAEDPVC VRTDAVNVPN DASVEAVKVD AAEDVFTGNK  1620
STDLAAGCTI REGDPADVVK VAESGLESSK CVAAVGVDKA VFPVTKMSTQ VADEPEAKAS  1680
PKVDVKSEPG SPQVATSVST DSASFTSAAA AVSHSGEPVF STTSSMQGRE KVGRVGGGET  1740
KSRREPTSWT QEEKEKFADI IRNHGKDWTR LHECLPSKSL TQIKTYFQNS KAKLGLLNAE  1800
GVNVPGGRVA GSRKRKVDEA ENGSNNVSCL SSGNELKGGG VSASDMDGVC QNVKAAVGGV  1860
PSMNPSMGMG SGPSGLESML YPFLGQRVED QIALQNFVRM YSANGLAQNI AGGVNPFVQQ  1920
YGFPMFPNAG HQRASQLSLQ QQLAASLAQK SGQAKGLQQQ ELQGFGSVQQ SGQASVQQKV  1980
AHQLQSAQMV RNQQLLASVM QHQAAAHHQQ NQTSKSVPHP LQPQVVVPQP GVAGQRQQHP  2040
QAQQGGSQQE QGSPGHPIGN PSLGVGNPTQ ASTQTKQLQQ PQVSLHQQQT LQQLQHQQHQ  2100
FLLQQHDHDH VRAQSHPQSH FHIQQPQNSH ASIVQPLIVQ KPKGVVPLQP QVTKPPLGTV  2160
AHQRCMPYRH DQQQLGPALS LLSGNGDSGL SNIRGEISNQ HGEIGDHRSC ISNGGASKGC  2220
DFSRADFHQL SASVQRVKPS HAAIPHRPSP TPAAVSAQGR PGDVKLFGQS LLSQPTSCAV  2280
SQSAARELVS AADRGSLQQS PASTAASSSL TSMPVSAASA TKSHGKESAF RGVSFMPDGL  2340
QGGRSSRGNQ GSLELWNNMS DVRSQAGPVS KSIDGDSDIR SMQECRMSRE AQDVESDPST  2400
LKLTHKLQHL DQARGVQEHS GSEGFSPVVH GVGKARACAN EHGVGVGFAV SCGEVSRTDP  2460
ERRGESIGID LGCSERSSIM ASRSNRGQVE SFAMQAAGLL ANGPQVHRNL IDYLMAITEL  2520
HQTRSLSSHS SVGQPRLEDH QWESLTRHPT NGTAVDALKV NPTLGLGSPI AAPQTHLSGN  2580
DLFQQCVRDS SMYFSQHYPS LAGHGVSSSA WNGGAGLVHP SEMQRVLVNP PLSSFLPGVF  2640
SRAPVTEDHL GSTETRDPER GGGGIC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	931	1025	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	931	1025	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10916	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390711.1	0.0	uncharacterized protein LOC112289604 isoform X2
TrEMBL	A0A2K1JRM0	0.0	A0A2K1JRM0_PHYPA; Uncharacterized protein
STRING	PP1S143_55V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3215	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-34	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c12_21500V3.1.p
Entrez Gene	5932189

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]