PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_21300V3.1.p
Common NamePHYPADRAFT_233854
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 496aa    MW: 53862.3 Da    PI: 5.2236
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_21300V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.81.2e-092668440
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        r C+ +++++++++C+ ++ +lC  C ++ H+       H++v
  Pp3c12_21300V3.1.p 26 RACDVCGSQRARWYCNADNAYLCYRCDQNVHSAnalalrHERV 68
                        68*****************************668888888876 PP
2CCT67.92.7e-23448491144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Pp3c12_21300V3.1.p 448 REARVLRYREKRRTRLFSKKIRYEVRKLNAERRPRMKGRFVKRT 491
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.952370IPR000315B-box-type zinc finger
SMARTSM003365.8E-102370IPR000315B-box-type zinc finger
CDDcd000213.13E-92670No hitNo description
PfamPF006432.4E-72668IPR000315B-box-type zinc finger
PROSITE profilePS5101716.182448490IPR010402CCT domain
PfamPF062031.6E-17448490IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MPGGGVKDAA TNSVATAMAI AGRASRACDV CGSQRARWYC NADNAYLCYR CDQNVHSANA  60
LALRHERVRL NSQGNISSQS PRKALVVDTS ARKHSRNHTA HAAQSPPSRK RSRLSRRPNP  120
HVSSPVDTLF KPHKASHRGS KVKSESSHEV PNFVTVNIQE SSFSFTHDSA TVMSMAEYCK  180
GRAAAAAAAA MSMSVDVDTY EELSSGDSDQ FLVPTGYLDD FESAAVAPVE DGSSPSEDAE  240
DAPGYEENHH DITDAVDLRD GLELEGGSDD AYRLDFSDIV ALREGDEDAF EGDYGETEGD  300
AFEGECGDTE GDGEVEAAAS NEQSCVDGFP EEQPNCVVPF TKEYLYKVKS ENSVRDGFAL  360
IKKEVAAVLR CSLEGEEAKP AAPSLLRLNF DDVLSAWSDR SLWTDGKRPQ TVPDDSSEAV  420
GGLDLGLVPD LSKGCAQGQP GTGGDRGREA RVLRYREKRR TRLFSKKIRY EVRKLNAERR  480
PRMKGRFVKR TTGCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458474RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.175630.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391003.10.0zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA9SRL20.0A9SRL2_PHYPA; Predicted protein
STRINGPP1S108_97V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-27B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]