PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_21290V3.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 2581aa MW: 276304 Da PI: 6.458 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.2e-09 | 1223 | 1266 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ ++v+++G++ +++Ia ++g++++ qck ++ k Pp3c12_21290V3.7.p 1223 QWTDRERELFTEGVRLFGKD-FERIAVHVGTTKSVGQCKAFFCKT 1266 5*****************99.*******************99886 PP | |||||||
2 | Myb_DNA-binding | 33.9 | 7.3e-11 | 1645 | 1686 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++d ++ +G++ W++ ++++ ++l q+k ++q+ Pp3c12_21290V3.7.p 1645 SWTQEEKEKFADIIRNHGKD-WTRLHECLP-SKSLTQIKTYFQN 1686 7*****************99.*********.************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.9E-13 | 960 | 1023 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 969 | 1016 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 17.276 | 972 | 1023 | IPR017884 | SANT domain |
SMART | SM00717 | 2.1E-7 | 973 | 1021 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 17.878 | 1219 | 1271 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-8 | 1220 | 1269 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-7 | 1223 | 1265 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.54E-9 | 1223 | 1273 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-5 | 1224 | 1265 | No hit | No description |
SuperFamily | SSF46689 | 2.83E-10 | 1640 | 1690 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.542 | 1641 | 1692 | IPR017884 | SANT domain |
SMART | SM00717 | 7.1E-9 | 1642 | 1690 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-7 | 1643 | 1687 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-8 | 1645 | 1686 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.32E-6 | 1645 | 1688 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2581 aa Download sequence Send to blast |
MYSPGRGDAR ATALPNARDS STSMPIDHAS AWHREPYNRD ARLDRGDRER IIGGKREWNS 60 DRASFGAPYP RAFGGLHPVN GSLGPPNKRR LNGRHTGFHN EGGRYVSPGH RGEPPFGSVG 120 PVENGLGRKF DRESFYPGSG CPVGGSGFGN GVGVDQRAKE LEERHKKEPF LLLRDGRDGG 180 SCGGIEHGVR SFPSQAVCEA EKSCWERERS KGAVGNGWES SQKLQRDLRE RVGGKAEGYS 240 RREGKLSQHD GGREWSQADK ELEGRRVDGY GSSSRDGLTG DGVGGIKEAV GGCEWRRKER 300 SSSVSASRSG SYVASSGTAK GPVGRPQALD VSGSASSPQV SPHSTASPGV QEASRDDGSQ 360 PSPPKRPRLG WGQGLAKYEK KKVVETDEVG VSASGGSVSG RERSSVSGAT TEVVQTQESQ 420 AAEESPVSVV SNLSTLPPLT PSASPSQQAA EVVSKAMVEC DGVEQEVVGK VCERVAAEAE 480 AGGWISKPEG VVADDVEKRG NMRAVTECGL EESVRQGECC EALGLKESME CQASPKVRGS 540 VEHCGGVEVG GEVGVSDAGS RWAKEDILLR VEKVEYEIEE VERELAKAEK VGSDRRAAGE 600 WVAGVVGDEG SAGVDGVVKV EDGIDDGEAM DVDAAEVHPG RVDSRESGEA MQVACSGRNW 660 SGGEECGNGR WGSDGAGAAG NVGERVGGGV SEGGHGGSVD DGGVLEEGEL GEEKQEEWTS 720 KQMSVGLESE GNPAYSPRAE TEPAQREEMD VTAGVSKCGV AEKEEAERKV ISWDVEVVAR 780 SLMEENKKRA EQARETFVHL LREGVGVEGT LYRCPAEAGV WKENVERHYR NQERMLEKMG 840 ERRQSLRFAE QVLAMRFRAL KEAWKQEQVG MRQQQRGTKP VRRWEVEKRN GTALHCHRSS 900 LRLRPVQAGM EKVEAVSEEC MKKVMAKAVV GPVRGVLKMP SMIVGQENRL ARRFESKNAL 960 VEDPVGMERE RKSMNPWSWE EKRVFLEKFA VYNKNFSKIA SHLELKTTAD CVEFYYRNQK 1020 SEDFERIRRR QQLKKRRDYS RVGGSFLSTG LQTSSQRREA NGHGRTEGAN VQTVGAVVGV 1080 SHISVGTKAA RSSMQQKPVE RQRVSSALEP GSLPGAVEIG KGVSGKENKW CGTGGVSGSA 1140 AGRGGIFGMV LSGATVSCGL SSAVAGAVKI GRERSSVKTM VDAGLVVASC GQIEQHVSAP 1200 MVTGNGYLQI YLEKSAGKEG DAQWTDRERE LFTEGVRLFG KDFERIAVHV GTTKSVGQCK 1260 AFFCKTRKRL GLDKLVEKYE DSLKVRVGAV MAESPECADV GRGEAAGVLA EDVRVSGLAV 1320 SAGPGMEVES DQDKGDESEK SVEVVLPVDV QEMEAVEAEA GEGVRVEEIV VEEVAVESEV 1380 VEVVPVYNGV LEDVPVHNGV LKEAPVDNGV LEDELVETPS VVSESVSEAV GASCIVSISK 1440 HAMMESGVCL TQSSVILDSV MKAVCEVPAT VAHSMGECGA EVSEDDRVEF VAVEKETFAE 1500 AVEVVVAKDG NTGNNSTDLA IGYVVEEDAA VIRKDAESDM ESCKCEPDTG LVKAVGMLAK 1560 ISTLAADEQE AKAVPTVDVK ADPESPQVAT SLSTDSASFP SLPAAVSHSG GSVFSNSSTQ 1620 GSQQGRERVG RVGGGETKSR REPTSWTQEE KEKFADIIRN HGKDWTRLHE CLPSKSLTQI 1680 KTYFQNSKAK LGLLNAEGVN ILGGRVAGSR KRKVDEAEDG SNNVACLSSG NELKGGGVSA 1740 RDMDGVCQNV KAAVGGVPSM GMGSGPSGLE SMLYPIFGQR VEDQIALEKF MRMYSANGLA 1800 QNIAGGVNPF VQQYGFPMFP NAGHQRASQL SLQQQLAASL AQKSGQAKGL QQQELQGSGS 1860 VQQSGQASVQ QKAAHQLQSA QMVRNQQLLA SMMQHQAAAH HQQNQTSKSV PHPLQPQVVV 1920 LQPGHAGQLQ QQPLVLNQQV IHHPQAQQGG SQQEQGSPGH LVGNPSLGAC SSAQVPNQMK 1980 QLLQHQALLQ QQQFQLALQH LQQQQQQQQL QQHQHHQDQT QAQVQVQAQA QIQALEHSHS 2040 HSQSHIHQPQ YSLASLLQPL VVQKPKVVVP LPPQVTRTPS PPVLQQGGLP HRHDQHQHGP 2100 SHTFLRGNVA SAVSSNPGEA STQQGEIGEQ WGSISHGGGS KERNFSRADL HQLSGAGQMV 2160 KPSNAEPSRP ATESPQARIG DVKLFGQSLL SQPTSCAVSQ NVARGSFSAA EKVSLQQSPV 2220 STAVSSLATS MPVPAASRVK PYGKESAFRG VPFSSEGRQG GWPPLGNRGS MEMWNIMNNA 2280 HSQVGQVLKS KVEELELHNM QECRMSREAQ DAESDQSTPK STHKPQHLEQ ARGAQDKSGS 2340 GGFSSLAYGV GKSRACVNEH GVSSGEVSRT DPERRGESIG LDSGCSERSS MMASRSSRGQ 2400 AESFAMQATG PFANGQQVPR TVIDALMAIA ELHRIRSSQF NSSVGQPRLE DHQWESLVQH 2460 TTKGMAVDAV KANPSLSLNR PIATPQTHLR GNGVSQHCVR DSGLYFTQHY PNLPGQSGVV 2520 SSAWNGGTGL VHPCDVQRML VNPALSSFLP SALSRASTAT EKYLGSSEVR DSDGGRDGTC 2580 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-15 | 931 | 1025 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-15 | 931 | 1025 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10916 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390845.1 | 0.0 | uncharacterized protein LOC112289670 isoform X2 | ||||
TrEMBL | A0A2K1JRM0 | 0.0 | A0A2K1JRM0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S143_55V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3215 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 9e-35 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_21290V3.7.p |