PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_2070V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 1234aa MW: 132886 Da PI: 5.8194

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_2070V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.6e-28	772	822	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c12_2070V3.1.p 772 EKTIGLDVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIPRWPSRKINKV 822 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.211	756	842	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-25	775	822	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.25E-21	1125	1213	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.3E-19	1130	1211	No hit	No description
SMART	SM00666	6.9E-18	1131	1213	IPR000270	PB1 domain
PROSITE profile	PS51745	23.919	1131	1213	IPR000270	PB1 domain
Pfam	PF00564	1.3E-16	1132	1212	IPR000270	PB1 domain
CDD	cd06407	7.63E-39	1132	1212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1234 aa Download sequence Send to blast
MEMPPPNEQR FQPTLPRWRT SELLPFSQQL SPGGPFSGVD SKFLIDDSVL TDLMDLDPLC 60 DQNTEPWAIV GQDFGLPFAS FSPGVFSPGN FSPSAMSPPA SQVSQSSQLY AQVNTLMAVP 120 GGQFSSGVLV QDGGLSPSSS RLLDLLDQPA TSEGYLVAMT PGAGANFAEM PQIYITHGQG 180 SNPHSNSQGA AVTERLNDLG NDRINYGNNC GVVSMRANQG GELAPSSRVG ELQDENSQLI 240 DPASFDCTNG AQNAQYDMIT KSENSRKRLM TVGTKESLKD RMMQALRLIG RSCVDVLAQV 300 WMPVRTTDNQ TVLSTREQPF VLERKTDHMW TYRSISENYV FAVTGGFPGL PGRVYLQQVP 360 EWTPNVQFYS DHEYLRVKHA MACDVKGTLA VPVFEAGSRN CLAVIELVMK AEKVQYAPEI 420 DIICRALQAV NLSCSDGMEL PALEFRTQGR RVALAEISEV LTAVCETHNL PLAQTWVPGS 480 HHSLEKPSNN KKSRIESGGN SKSSGGSYSS SRVCLRTGDG PHYVKDSKMW GFRQACLEHF 540 LEKGQGVPGK AFASNQPAFE SDVKNYSKIK YPLGHYAQLF GLTAAVAIRL RSIHTGTDDF 600 VLEFFLPVNC TSSNDQQVML NSLSITMQRV CRSLRTVTDK EFADEVKAAT AEEKADAEST 660 LSKAMDPLED QGSGGASAMG SSFSENATEG DHLQEKLAQD PQVASASSLQ RSQSVASKNV 720 QMEESSEHVE PMSNGQKQTA AREAGALRTF TSIAQNAANP NRKLDKRRGT TEKTIGLDVL 780 QQYFAGSLKD AAKSIGVCPT TLKRICRQHG IPRWPSRKIN KVSRSLKKLQ GVIESVQGAD 840 GALQINALSG DIASAAVAAA AVTGVPAAKD ADTPEGRPAA SPSDGHLNKQ DGLINGESNQ 900 TPMSNLDEEF SPRDSQPSRH PAVASNLSYA RVGSKDAANL ANTTDTRSSP TDHTWNRNSD 960 ESSEGAGRDS TTYGDTQNFV TVSSEQELKG AVRKLDRKED ASANLDTPLL CLPNGSSSRS 1020 QCGASDSSMS EFCRNADSGS GTGFYGGAIC VESRVHGGAR ALAALRDSDL SSYGNPVACG 1080 RYPLEDSPRE VTGGHRTGSS QHNGSDSSSP SSGAGGHPRK HWPAPAPEPE AVTVKATFGA 1140 DTVRFKLLVK SSYLELRTEI SGRLKVDDQG FDLKYLDDEE EWMLITCDAD VKECIEVART 1200 LGRHTVKLMV RENGSRNSSG NNSNISLQVM TTS*

Sequence ? help Back to Top

Protein Sequence Length: 1234 aa Download sequence Send to blast

MEMPPPNEQR FQPTLPRWRT SELLPFSQQL SPGGPFSGVD SKFLIDDSVL TDLMDLDPLC  60
DQNTEPWAIV GQDFGLPFAS FSPGVFSPGN FSPSAMSPPA SQVSQSSQLY AQVNTLMAVP  120
GGQFSSGVLV QDGGLSPSSS RLLDLLDQPA TSEGYLVAMT PGAGANFAEM PQIYITHGQG  180
SNPHSNSQGA AVTERLNDLG NDRINYGNNC GVVSMRANQG GELAPSSRVG ELQDENSQLI  240
DPASFDCTNG AQNAQYDMIT KSENSRKRLM TVGTKESLKD RMMQALRLIG RSCVDVLAQV  300
WMPVRTTDNQ TVLSTREQPF VLERKTDHMW TYRSISENYV FAVTGGFPGL PGRVYLQQVP  360
EWTPNVQFYS DHEYLRVKHA MACDVKGTLA VPVFEAGSRN CLAVIELVMK AEKVQYAPEI  420
DIICRALQAV NLSCSDGMEL PALEFRTQGR RVALAEISEV LTAVCETHNL PLAQTWVPGS  480
HHSLEKPSNN KKSRIESGGN SKSSGGSYSS SRVCLRTGDG PHYVKDSKMW GFRQACLEHF  540
LEKGQGVPGK AFASNQPAFE SDVKNYSKIK YPLGHYAQLF GLTAAVAIRL RSIHTGTDDF  600
VLEFFLPVNC TSSNDQQVML NSLSITMQRV CRSLRTVTDK EFADEVKAAT AEEKADAEST  660
LSKAMDPLED QGSGGASAMG SSFSENATEG DHLQEKLAQD PQVASASSLQ RSQSVASKNV  720
QMEESSEHVE PMSNGQKQTA AREAGALRTF TSIAQNAANP NRKLDKRRGT TEKTIGLDVL  780
QQYFAGSLKD AAKSIGVCPT TLKRICRQHG IPRWPSRKIN KVSRSLKKLQ GVIESVQGAD  840
GALQINALSG DIASAAVAAA AVTGVPAAKD ADTPEGRPAA SPSDGHLNKQ DGLINGESNQ  900
TPMSNLDEEF SPRDSQPSRH PAVASNLSYA RVGSKDAANL ANTTDTRSSP TDHTWNRNSD  960
ESSEGAGRDS TTYGDTQNFV TVSSEQELKG AVRKLDRKED ASANLDTPLL CLPNGSSSRS  1020
QCGASDSSMS EFCRNADSGS GTGFYGGAIC VESRVHGGAR ALAALRDSDL SSYGNPVACG  1080
RYPLEDSPRE VTGGHRTGSS QHNGSDSSSP SSGAGGHPRK HWPAPAPEPE AVTVKATFGA  1140
DTVRFKLLVK SSYLELRTEI SGRLKVDDQG FDLKYLDDEE EWMLITCDAD VKECIEVART  1200
LGRHTVKLMV RENGSRNSSG NNSNISLQVM TTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391180.1	0.0	protein NLP3-like
TrEMBL	A0A2K1JP51	0.0	A0A2K1JP51_PHYPA; Uncharacterized protein
STRING	PP1S128_79V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-130	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c12_2070V3.1.p