PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_18020V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 429aa MW: 47278.6 Da PI: 4.7652 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.2 | 1.1e-55 | 22 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL++kv ++++ + ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd++ Pp3c12_18020V3.1.p 22 LPPGFRFHPTDEELVSYYLTNKVLDSSFAV-HAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGIRTNRATDAGYWKATGKDRD 111 79*************************999.88***************99999************************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 v+++ + lvg+kktLvfy+grapkgekt+W+mheyrle Pp3c12_18020V3.1.p 112 VFAHgRPPLVGMKKTLVFYRGRAPKGEKTSWIMHEYRLE 150 ***744456****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-64 | 17 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.611 | 22 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-28 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MATACLQGPQ GQVQSQHGEP FLPPGFRFHP TDEELVSYYL TNKVLDSSFA VHAIAEVDLN 60 KCEPWDLPEK AKMGEKEWYF FSLRDRKYPT GIRTNRATDA GYWKATGKDR DVFAHGRPPL 120 VGMKKTLVFY RGRAPKGEKT SWIMHEYRLE GDGGHSLSPR VNKDEWVVCR IFQKNSGGKG 180 SFLFSDSCMR SHAVMYQIED TRSSLPPVMN NNSPNPTVTD GGTCTDCETC AGTEQMPACY 240 NCVDDFDHGK ETNSVMSWIN AQSTGMDILQ QVGDLNNLSN MLSKQYPVYD AAYEKGMSLS 300 RQLGFTPQVL LQPANMTTPT GLRVTSLRPK TEPSSFSEGE DEAQSIPEGY GYDGWQAEDA 360 EASLYNNNDG TADDSSSPLQ SSTGGTELSC LSGSFCSGDH MNNFKYRLQD ITALADSGLG 420 TEILGWCC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-55 | 22 | 179 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 8e-55 | 22 | 179 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 8e-55 | 22 | 179 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 8e-55 | 22 | 179 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 8e-55 | 22 | 179 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 8e-55 | 22 | 179 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 8e-55 | 22 | 179 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 8e-55 | 22 | 179 | 20 | 173 | NAC domain-containing protein 19 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.9945 | 1e-107 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391010.1 | 0.0 | NAC domain-containing protein 46-like | ||||
Refseq | XP_024391011.1 | 0.0 | NAC domain-containing protein 46-like | ||||
TrEMBL | A0A2K1JR80 | 0.0 | A0A2K1JR80_PHYPA; Uncharacterized protein | ||||
STRING | PP1S46_208V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 2e-83 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_18020V3.1.p |