PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_17560V3.1.p
Common NamePHYPADRAFT_74293
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 455aa    MW: 51029.7 Da    PI: 7.8259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_17560V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.4e-1254152499
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg....rsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                           t     ks++l lp  f+ ehg k   +++++l++ s+      W+v+l++  ++s    + ++ GWk+F  a +L++gD+++F l++ 
  Pp3c12_17560V3.1.p  54 SNTDRPGKKSCLLGLPVWFVLEHGDK--FQRDVVLRSGSSpkpwMPWDVRLSVhVRYSTYpdVNFSYGWKGFSAACDLRVGDSLIFLLTEF 142
                         3344455677*************987..6679*****99999999999*998754444446788999********************9765 PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                         sef   v+vfr+
  Pp3c12_17560V3.1.p 143 SEF--EVHVFRR 152
                         888..9999997 PP
2B339.88.2e-13288394197
                         EEEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT CS
                  B3   1 ffkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgr......yvltkGWkeFvkangLkeg 77 
                         f+k+ tps+v ++    + l +pk f+ +hg k   ++ ++l++ s+    + W+v ++++++++       + +t+GWk+F+   gL+ g
  Pp3c12_17560V3.1.p 288 FKKTITPSNVDRNnkkfCSLLMPKWFVLQHGDK--FQRSVVLRSGSSakpwQPWNVVVKMWRRPECenfsprVAFTAGWKDFATFCGLRIG 376
                         8899999*999999999999**********988..5567*****99999*********99666654566777******************* PP

                         -EEEEEE-SSSEE..EEEEE CS
                  B3  78 DfvvFkldgrsefelvvkvf 97 
                         D vvF l + sef   v+v+
  Pp3c12_17560V3.1.p 377 DAVVFNLRKLSEF--DVHVV 394
                         ******8655888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-1645154IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1446151No hitNo description
Gene3DG3DSA:2.40.330.109.8E-1546153IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.004947153IPR003340B3 DNA binding domain
PROSITE profilePS5086310.84251153IPR003340B3 DNA binding domain
PfamPF023622.2E-756152IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-17280398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17283395IPR015300DNA-binding pseudobarrel domain
CDDcd100177.37E-15287395No hitNo description
SMARTSM010190.0024288397IPR003340B3 DNA binding domain
PfamPF023623.9E-8288393IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898292397IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MARMHGASTV GDVDVDAKED EEEAWKVHRG NVKREQLLQS LQGSIHFEKI LTKSNTDRPG  60
KKSCLLGLPV WFVLEHGDKF QRDVVLRSGS SPKPWMPWDV RLSVHVRYST YPDVNFSYGW  120
KGFSAACDLR VGDSLIFLLT EFSEFEVHVF RRTENPDVSS LLTGENQGDD SDLFREKVSK  180
SHGSTSRYMP TESFVELVPH DSCGSIEKRG TIGGEGAVSA SPGGTSLKNS NCNMTTKGNE  240
QSTAMRTLVG TLECQVQPTV HHKENAIHFP KTGRFGQHTS KSPEVAYFKK TITPSNVDRN  300
NKKFCSLLMP KWFVLQHGDK FQRSVVLRSG SSAKPWQPWN VVVKMWRRPE CENFSPRVAF  360
TAGWKDFATF CGLRIGDAVV FNLRKLSEFD VHVVRGVGTS MPSAFQGPRN WDVVPEPLQE  420
IENILFTPPE LCMDLQKSPE HAGGDHQEHM ISFP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390570.10.0uncharacterized protein LOC112289544
TrEMBLA9S4160.0A9S416_PHYPA; Predicted protein
STRINGPP1S46_251V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]