PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_17180V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 500aa MW: 54612.5 Da PI: 7.2914 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l ++v+ +G+g+W+++ ++ g+ R++k+c++rw +yl Pp3c12_17180V3.1.p 13 KGAWAAEEDEKLRKYVETHGTGHWRSVGKKAGLQRCGKSCRLRWTNYL 60 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 67 | 109 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++ +eE++l+v++++ +G++ W++Ia+ m+ gRt++++k++w++ Pp3c12_17180V3.1.p 67 GSFDPEEEDLIVKLHAAHGSR-WSLIAAQMP-GRTDNDIKNHWNT 109 7899*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.97 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.72E-29 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.35E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.754 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.05E-12 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 68 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MTRLSKSNED VRKGAWAAEE DEKLRKYVET HGTGHWRSVG KKAGLQRCGK SCRLRWTNYL 60 RPDIRHGSFD PEEEDLIVKL HAAHGSRWSL IAAQMPGRTD NDIKNHWNTR LKKKLCDMGI 120 DPVTHKPIAD LLRDLAGTMA QSTGGNNQAS EEAARRCFRD SLVSKAVREC GKNNNPAFSS 180 SQLTSHSMNI HHTDEVKSIV GDPHGANDYL GQKSSNNSGL SHSMDDSSST EETLSRRSTS 240 PPISSDLDYQ RSASGADVED PCRRFAVVSS AQMQIEANLH SRFTEASTTL PTSFLDPAGC 300 NSLTTSPLSS SGSEFLCQRK SDQTLAGPHQ LRTSYTRWLP PRNALAQEDF PNAAVQLPLS 360 RFGSEAQNQF TAQSHAESSF MQGSDVTRPQ PTAAASKLDI RINLGFNHQP ESLQENLNFG 420 YRSFGGPLMS PAATGNSLLD VSAQHALSGY AGQFPGSIIN PSNVNVASYN SPLAGATAGV 480 RLHEYEVPSP RMVLWDFQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 10 | 115 | 4 | 108 | B-MYB |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3233 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390138.1 | 0.0 | transcription factor MYB94-like | ||||
TrEMBL | A0A2K1JR42 | 0.0 | A0A2K1JR42_PHYPA; Uncharacterized protein | ||||
STRING | PP1S46_302V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 4e-60 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_17180V3.1.p |