PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_15970V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 370aa    MW: 42492.3 Da    PI: 4.7098
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_15970V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.5e-11177231453
                 AP2   4 kGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkl 53 
                          GV+++ k+  W+A+++   ++ n+  k+  ++ lg+f t++eA+ a++ a++k+
  Pp3c12_15970V3.1.p 177 IGVTYHQKNRNWEAHLWIkDKQlNKrkKKgLQVFLGNFETKDEAKTAHDLAALKY 231
                         5******9999*******555598896447***********************98 PP
2AP223.61.3e-07282339155
                 AP2   1 sgykGVrwdkkrgr....WvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ kGV+ +k ++r    ++A I     ++g +++f lg++ ++e+A ka+++a + l+g
  Pp3c12_15970V3.1.p 282 SRLKGVSIRK-WKRtqlcYEAKITQlQ-SDGEKRTFDLGRYASEEDAGKAYDRALLFLKG 339
                         5779***999.9**9*******88844.34435*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.825175247IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-6175231IPR016177DNA-binding domain
PfamPF008472.3E-6177231IPR001471AP2/ERF domain
SMARTSM003800.0047178253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-6185248IPR001471AP2/ERF domain
SMARTSM003806.7E-4283355IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-5283348IPR016177DNA-binding domain
PROSITE profilePS5103210.613283349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-7285349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MQDHVDIMVL LDEIAAEWEW RLDQEHTLCS RLLDVQTQLD DEDQSWAYAP PEVGFGNDAE  60
VQLGGEMEEQ CMISVEDFAL EQEWQLENDQ QPLPESTLDV LHASFDEHQC MITVEDFALE  120
LEWQLENEQQ ASSEGSLDVL HAGSNPEDAS SVCKPIEPAG VPTTQPPRHV LPPSQAIGVT  180
YHQKNRNWEA HLWIKDKQLN KRKKKGLQVF LGNFETKDEA KTAHDLAALK YDVSETKKGK  240
PYPLNFPEHT HALYMRDHAD WSTRDFVWKI RRFSYKFSKG KSRLKGVSIR KWKRTQLCYE  300
AKITQLQSDG EKRTFDLGRY ASEEDAGKAY DRALLFLKGD DSDCVTNFRP SSYSLQEIEE  360
AGRRLQNSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1JR060.0A0A2K1JR06_PHYPA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-20AP2 family protein