PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_15190V3.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 387aa MW: 44006.9 Da PI: 6.5906 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.9 | 9.8e-50 | 39 | 172 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvka...eek..ewyfFskrdkkyatgkrknratksgyWka 85 +p+GfrFhPt+eelv +yL kkv++++++l + i+e+d+yk+ePwdL++ ++++ +ek ++yfFs++ kky+tg+r+nrat+ g+Wka Pp3c12_15190V3.9.p 39 VPVGFRFHPTEEELVGYYLPKKVSDRRIDL-DLIRELDLYKFEPWDLHQlCMTQggsNEKqiDYYFFSRKGKKYPTGTRANRATTMGFWKA 128 599***************************.99**************85433332333333466*************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk++++k +++l+g++ktLvfy+grap+g ktdW+mhe+rl Pp3c12_15190V3.9.p 129 TGRDKPIHTKlNQTLIGMRKTLVFYQGRAPHGIKTDWIMHEFRL 172 *********988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-54 | 32 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.427 | 39 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-24 | 40 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MVRECADGML MCCCGVDLCN CKQCKSSDPC KMSRLAPKVP VGFRFHPTEE ELVGYYLPKK 60 VSDRRIDLDL IRELDLYKFE PWDLHQLCMT QGGSNEKQID YYFFSRKGKK YPTGTRANRA 120 TTMGFWKATG RDKPIHTKLN QTLIGMRKTL VFYQGRAPHG IKTDWIMHEF RLDDGSERPT 180 HDGGWVVCRV FKKNKNLMME MQQERAISYE GQMGALPPEA AGTPNVLPGD DQLTFLEKSS 240 GVKREIISLD DYQLRQSNQY LNQRELGYPS SLNRPDDVNY FMNSYQETSN SGLCEFNDPQ 300 TSSGSDDTEL NHEETISGSF HDVDWSALLQ DPVRPAPVLK ASLRCPSMTK LVHDDVTGVL 360 PQLKRQNSDI VSSLDLWNYA QIAQPM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-42 | 39 | 194 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898088 | 0.0 | AB898088.1 Physcomitrella patens PpVNS8 mRNA for NAC transcription factor PpVNS8, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390072.1 | 0.0 | NAC domain-containing protein 30-like isoform X1 | ||||
TrEMBL | X5IHC6 | 0.0 | X5IHC6_PHYPA; NAC transcription factor PpVNS8 | ||||
STRING | PP1S70_104V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-60 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_15190V3.9.p |