PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_13650V3.3.p
Common NamePHYPADRAFT_78341
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family BES1
Protein Properties Length: 350aa    MW: 37293.3 Da    PI: 8.9916
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_13650V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822128.67.4e-4020109697
              DUF822   6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasaspesslq 95 
                         k ++ E+E++k+RER+RRai++ki+aGLR++G+y+lp raD+n+VlkAL+ eAGwvve+DG+tyr +++k+ + ++  g s+   p+sslq
  Pp3c12_13650V3.3.p  20 KLSASEKEKTKLRERQRRAITTKIFAGLRKYGGYNLPPRADINDVLKALASEAGWVVEPDGNTYRsQHFKRVHVMSEQGFSQ---PSSSLQ 107
                         56789************************************************************77888885555555443...333333 PP

              DUF822  96 ss 97 
                         +s
  Pp3c12_13650V3.3.p 108 HS 109
                         22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.9E-3423112IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MPKEVTCESD SKSGTSSMAK LSASEKEKTK LRERQRRAIT TKIFAGLRKY GGYNLPPRAD  60
INDVLKALAS EAGWVVEPDG NTYRSQHFKR VHVMSEQGFS QPSSSLQHSL RQTNPAMNRL  120
NLIPPPTTLN TGFNCTLAGL MADAGELREG NCSTTASPRH HSMGGAAGHH SNSSSMTLIG  180
SGCISNSPFA SPASSEGGPP SQRLSQGNPY LAGLSNGFLP SCGQVLSDGR DGDSSGIKEE  240
SAAAAAAAYF SADTLDARDF QMQRATLDAS HFLNSRDFSG RGSLTNSNNN NMNSLFFNAA  300
QQAPNRFGQR AAPQLPNLMM LSTGHPFLQE QRASNQNTPL GSPRLQDPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-103884391437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-103884391437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-103884391437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-103884391437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391346.10.0BES1/BZR1 homolog protein 4-like isoform X1
TrEMBLA0A2K1JQN90.0A0A2K1JQN9_PHYPA; Uncharacterized protein
TrEMBLA9SEM00.0A9SEM0_PHYPA; Predicted protein
STRINGPP1S70_273V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.17e-22beta-amylase 7
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]