PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_13650V3.2.p

Common Name

PHYPADRAFT_78341

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

BES1

Protein Properties

Length: 339aa MW: 35913.7 Da PI: 8.7369

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_13650V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	124.4	1.5e-38	20	95	6	81
DUF822 6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaea 81 k ++ E+E++k+RER+RRai++ki+aGLR++G+y+lp raD+n+VlkAL+ eAGwvve+DG+tyr +g++++ +++ Pp3c12_13650V3.2.p 20 KLSASEKEKTKLRERQRRAITTKIFAGLRKYGGYNLPPRADINDVLKALASEAGWVVEPDGNTYRsQGFSQP-SSSL 95 56789************************************************************7777776.2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	7.2E-35	23	182	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MPKEVTCESD SKSGTSSMAK LSASEKEKTK LRERQRRAIT TKIFAGLRKY GGYNLPPRAD 60 INDVLKALAS EAGWVVEPDG NTYRSQGFSQ PSSSLQHSLR QTNPAMNRLN LIPPPTTLNT 120 GFNCTLAGLM ADAGELREGN CSTTASPRHH SMGGAAGHHS NSSSMTLIGS GCISNSPFAS 180 PASSEGGPPS QRLSQGNPYL AGLSNGFLPS CGQVLSDGRD GDSSGIKEES AAAAAAAYFS 240 ADTLDARDFQ MQRATLDASH FLNSRDFSGR GSLTNSNNNN MNSLFFNAAQ QAPNRFGQRA 300 APQLPNLMML STGHPFLQEQ RASNQNTPLG SPRLQDPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	8e-11	38	85	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	8e-11	38	85	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	8e-11	38	85	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	8e-11	38	85	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391347.1	0.0	protein BZR1 homolog 4-like isoform X2
TrEMBL	A0A2K1JQN9	0.0	A0A2K1JQN9_PHYPA; Uncharacterized protein
TrEMBL	A9SEM0	0.0	A9SEM0_PHYPA; Predicted protein
STRING	PP1S70_273V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	3e-22	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Pp3c12_13650V3.2.p
Entrez Gene	5927884

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]