PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_12690V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 668aa    MW: 74193.1 Da    PI: 7.0559
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_12690V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3407.2e-13178277198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kv +  d  ++g +vlpk+ +eeh   ++k++++ +tl d  g++W+++++++ ++++  y+++     +v++ +L+ gD+v F++ + 
  Pp3c12_12690V3.3.p 178 FDKVASITDCRSTGHFVLPKRKVEEHfpPINKPGGIWMTLVDAAGKEWSFEFCFWHSKESriYYFK-KFYPYVQSTDLCGGDTVFFSRLE- 266
                         677777788899999*************99999********************9877777768887.7999****************665. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++l++++++
  Pp3c12_12690V3.3.p 267 PQGTLFMGFRK 277
                         77777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-19174287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-10176277No hitNo description
SuperFamilySSF1019369.29E-17176280IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.713178279IPR003340B3 DNA binding domain
SMARTSM010191.2E-8178278IPR003340B3 DNA binding domain
PfamPF023624.3E-9179277IPR003340B3 DNA binding domain
PROSITE profilePS5105012.856455505IPR011124Zinc finger, CW-type
PfamPF074961.9E-9460502IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MLTGDFPSSS QSRVRHAQFT NYIALPCGEE PMDTRGIFQS SFGKSTPAHG DITKKSSSAL  60
ASTLSTCQVP VLGHHVCDIN TVSKPAGGAS LLVGCVLGKS SSKPKHQIRG SIKRNPSERK  120
KELLVTSSHD RGPTLNGKGR PGTMALPRSI SINALRISNL NSPQPSQKFL GTTMTFLFDK  180
VASITDCRST GHFVLPKRKV EEHFPPINKP GGIWMTLVDA AGKEWSFEFC FWHSKESRIY  240
YFKKFYPYVQ STDLCGGDTV FFSRLEPQGT LFMGFRKQKP SPPKDQSKRR EQSNGGPICL  300
ANDWSPSPDE LANPQEKPVT MSIDEGNCKY ASERGTSQCK RKRKKEFPPV SLSKRTEVVD  360
HLAADKALVE KKSTTRLSVS PEAPQHVDKI SGVLGSKGKR LRVNVDEYSE WKDTQDLLRP  420
APGALPSVVT IEGHDFEEYE KPPILIKRSC CSLEARGESQ WVKCDDCGSW RRLPADAFVP  480
EKWNCSDNDR DLTRAYCNAP QEPIHHDSDQ LQRFGLDVEG RIKDESESRE EVYEYDWATP  540
EQHHSARADA CDYKQPTLWS AAMTLIDGSL RRGTDSYSQL EKCSTYTSDS DSLDQSPSSA  600
LQSPRLEQFC ELIEESSPMS TNSHATEAGR DLEVSTDCDE PIDSAGNGKR YEMTTTECYD  660
FLGPPGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-2217027716123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340344RKRKK
2340345RKRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390050.10.0uncharacterized protein LOC112289234 isoform X3
TrEMBLA0A2K1JQJ80.0A0A2K1JQJ8_PHYPA; Uncharacterized protein
STRINGPP1S261_36V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.15e-45high-level expression of sugar-inducible gene 2