PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_12690V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 652aa    MW: 72521.2 Da    PI: 7.0048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_12690V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3406.9e-13162261198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kv +  d  ++g +vlpk+ +eeh   ++k++++ +tl d  g++W+++++++ ++++  y+++     +v++ +L+ gD+v F++ + 
  Pp3c12_12690V3.1.p 162 FDKVASITDCRSTGHFVLPKRKVEEHfpPINKPGGIWMTLVDAAGKEWSFEFCFWHSKESriYYFK-KFYPYVQSTDLCGGDTVFFSRLE- 250
                         677777788899999*************99999********************9877777768887.7999****************665. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++l++++++
  Pp3c12_12690V3.1.p 251 PQGTLFMGFRK 261
                         77777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-19158271IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-10160261No hitNo description
SuperFamilySSF1019369.03E-17160264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.713162263IPR003340B3 DNA binding domain
SMARTSM010191.2E-8162262IPR003340B3 DNA binding domain
PfamPF023624.2E-9163261IPR003340B3 DNA binding domain
PROSITE profilePS5105012.856439489IPR011124Zinc finger, CW-type
PfamPF074961.9E-9444486IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MLTGDFPSSS QSRVRHAQFT NYIALPCGEE PMDTRGIFQS SFGKSTPAHG DITKKSSSAL  60
ASTLSTCQVP GGASLLVGCV LGKSSSKPKH QIRGSIKRNP SERKKELLVT SSHDRGPTLN  120
GKGRPGTMAL PRSISINALR ISNLNSPQPS QKFLGTTMTF LFDKVASITD CRSTGHFVLP  180
KRKVEEHFPP INKPGGIWMT LVDAAGKEWS FEFCFWHSKE SRIYYFKKFY PYVQSTDLCG  240
GDTVFFSRLE PQGTLFMGFR KQKPSPPKDQ SKRREQSNGG PICLANDWSP SPDELANPQE  300
KPVTMSIDEG NCKYASERGT SQCKRKRKKE FPPVSLSKRT EVVDHLAADK ALVEKKSTTR  360
LSVSPEAPQH VDKISGVLGS KGKRLRVNVD EYSEWKDTQD LLRPAPGALP SVVTIEGHDF  420
EEYEKPPILI KRSCCSLEAR GESQWVKCDD CGSWRRLPAD AFVPEKWNCS DNDRDLTRAY  480
CNAPQEPIHH DSDQLQRFGL DVEGRIKDES ESREEVYEYD WATPEQHHSA RADACDYKQP  540
TLWSAAMTLI DGSLRRGTDS YSQLEKCSTY TSDSDSLDQS PSSALQSPRL EQFCELIEES  600
SPMSTNSHAT EAGRDLEVST DCDEPIDSAG NGKRYEMTTT ECYDFLGPPG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-2215426115122B3 domain-containing transcription repressor VAL1
5yzz_C1e-2215426115122B3 domain-containing transcription repressor VAL1
5z00_C1e-2215426115122B3 domain-containing transcription repressor VAL1
5z00_G1e-2215426115122B3 domain-containing transcription repressor VAL1
5z00_K1e-2215426115122B3 domain-containing transcription repressor VAL1
5z00_M1e-2215426115122B3 domain-containing transcription repressor VAL1
6j9a_A1e-2215426116123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324328RKRKK
2324329RKRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390052.10.0B3 domain-containing transcription repressor VAL2-like isoform X5
TrEMBLA0A2K1JQJ80.0A0A2K1JQJ8_PHYPA; Uncharacterized protein
STRINGPP1S261_36V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.16e-45high-level expression of sugar-inducible gene 2