PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_12460V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 424aa    MW: 47250.6 Da    PI: 8.0217
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_12460V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.71.4e-1380139155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ ++ +gr++A+++d   +n+   k+ k+++lg +  +  Aa+a++ a++k++g
  Pp3c12_12460V3.1.p  80 SQYRGVTKHRGTGRFEAHLWDkTGWNQkqhKKgKQVYLGAYEKETAAARAYDMAALKYWG 139
                         78*******************555577887557**********99*************98 PP
2AP256.28.3e-18182234156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV +++ +grW+A+I  + e g +k+ +lg+fgt eeAa+a+++a+ k++g+
  Pp3c12_12460V3.1.p 182 SKYRGVARHHHNGRWEARIGRV-E-G-NKYLYLGTFGTQEEAAEAYDKAAIKYRGA 234
                         89****99**********9994.2.2.5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.77E-1480148IPR016177DNA-binding domain
PfamPF008473.8E-980139IPR001471AP2/ERF domain
PROSITE profilePS5103218.3681147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-1481147IPR001471AP2/ERF domain
SMARTSM003801.6E-2281153IPR001471AP2/ERF domain
CDDcd000189.55E-25182241No hitNo description
PfamPF008477.0E-13182233IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17182242IPR016177DNA-binding domain
PROSITE profilePS5103218.492183241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-18183241IPR001471AP2/ERF domain
SMARTSM003804.4E-27183247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MKSAETETEG ACSSSRSGSG SASGSYSGAE IGAVGIGVVG RSRRKRSSRM RTFSSGTAAL  60
ALVVSTAEGQ TRERKHERSS QYRGVTKHRG TGRFEAHLWD KTGWNQKQHK KGKQVYLGAY  120
EKETAAARAY DMAALKYWGP ETVINFELED YTQELKEMAK ISKEEYLATL RRKSTGFSRG  180
VSKYRGVARH HHNGRWEARI GRVEGNKYLY LGTFGTQEEA AEAYDKAAIK YRGAAAVTNF  240
ELTHYPELAK DIPLKQRRKN CVTTATSTDS KPVTKVDGSP SNNPDVLEKA NQSNVHGLKM  300
IQCPQPPSCL DDLDDFHVQR KHRLQFKQEA QRISLDDFCF EGHSEDVHTK SARNFCSFSH  360
IKDEDLPDFY TDPEDLSIDY LDSKADVLGV DYEDYWLADL DSVYSGCSSC MLEGVQSPIL  420
ARG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.160140.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390314.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
TrEMBLA0A2K1JQI80.0A0A2K1JQI8_PHYPA; Uncharacterized protein
STRINGPP1S261_59V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.37e-86AP2 family protein