PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_11150V3.1.p

Common Name

PHYPADRAFT_99470

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 629aa MW: 67154.3 Da PI: 6.9815

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_11150V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.9	3.5e-31	343	397	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLHe+Fv av++LGG+++AtPk++l+lm+ +++t++hvkSHLQkYRl Pp3c12_11150V3.1.p 343 KARLRWTPELHEKFVAAVTKLGGPDRATPKSVLRLMGCNDITIYHVKSHLQKYRL 397 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.783	340	401	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-29	341	397	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-16	342	398	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	343	397	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-9	345	396	IPR001005	SANT/Myb domain
Pfam	PF14379	8.0E-18	427	470	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MAPILSTPPS HAPASQRDGA VASEDDIACP AHPVFSSSSK KPIPTQSMAE IMLRGRHQTP 60 PSLSDIHGPS PSFYVAPHGS HEDYDLQHVV DVAIAVPEHG SRQLAQILYD RSFELKAPQW 120 PRSNGLNSPQ FQEPNRPPEW LRPSSATATR NLPVVAGPPN SASTQPKGQT INAPIKAEST 180 PLRNLAFPPY ANPTAESALL SPIPTVPVPA PGLVNVPETT VNVLSATTTL HREPLQVLLA 240 GCTTSQQSSG SNASSQIAKS PTLTSDWETS NWPDIIDCMD IQNHSDVLRQ QNNIPQMTAS 300 PSLLSIHHLK TDQPQQSTGT ASEGSPGPSF ETTHVYSAAE AAKARLRWTP ELHEKFVAAV 360 TKLGGPDRAT PKSVLRLMGC NDITIYHVKS HLQKYRLIPE MSTAESKCER RRHSQCQGGL 420 DAASTVKMSQ ALQMQMEVQQ RLHEQLETQR QLQLRIEEQG ANLQRMIDAQ VIAGQALGIP 480 SDQIANGEFF ARATGCALNP EDSTVFTGVT PPHITSWSSA AGTSSGPSLK RPRVEVTVPP 540 LVLIPKVLPT NINSNGSASS PNADASSPMS YTDTSGTSNG VMTSRGEASA YLETNAVTTA 600 IPRHASQPQG CSPKQHGSVP AATMQSSV*

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MAPILSTPPS HAPASQRDGA VASEDDIACP AHPVFSSSSK KPIPTQSMAE IMLRGRHQTP  60
PSLSDIHGPS PSFYVAPHGS HEDYDLQHVV DVAIAVPEHG SRQLAQILYD RSFELKAPQW  120
PRSNGLNSPQ FQEPNRPPEW LRPSSATATR NLPVVAGPPN SASTQPKGQT INAPIKAEST  180
PLRNLAFPPY ANPTAESALL SPIPTVPVPA PGLVNVPETT VNVLSATTTL HREPLQVLLA  240
GCTTSQQSSG SNASSQIAKS PTLTSDWETS NWPDIIDCMD IQNHSDVLRQ QNNIPQMTAS  300
PSLLSIHHLK TDQPQQSTGT ASEGSPGPSF ETTHVYSAAE AAKARLRWTP ELHEKFVAAV  360
TKLGGPDRAT PKSVLRLMGC NDITIYHVKS HLQKYRLIPE MSTAESKCER RRHSQCQGGL  420
DAASTVKMSQ ALQMQMEVQQ RLHEQLETQR QLQLRIEEQG ANLQRMIDAQ VIAGQALGIP  480
SDQIANGEFF ARATGCALNP EDSTVFTGVT PPHITSWSSA AGTSSGPSLK RPRVEVTVPP  540
LVLIPKVLPT NINSNGSASS PNADASSPMS YTDTSGTSNG VMTSRGEASA YLETNAVTTA  600
IPRHASQPQG CSPKQHGSVP AATMQSSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	342	396	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	342	396	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	342	396	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	342	396	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	342	396	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	342	396	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	342	396	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	342	396	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14689	0.0	sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390666.1	0.0	uncharacterized protein LOC112289587 isoform X2
TrEMBL	A0A2K1JQC4	0.0	A0A2K1JQC4_PHYPA; Uncharacterized protein
STRING	PP1S391_54V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	8e-35	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c12_11150V3.1.p
Entrez Gene	5947337

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]