PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_10V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 635aa    MW: 69181.7 Da    PI: 5.5221
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_10V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS160.61.4e-494426212181
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      v+lLl++Aeav++gd+e+a+a+Larl+++ sp++ +++qR+a+yf eAL++r+++ +++ + +l + +  ++ ++ ++++a+  f evsP++kf
  Pp3c12_10V3.7.p 442 VNLLLRAAEAVDNGDAEMAKAILARLNQHISPSReQSIQRVAHYFREALETRIMG-WENFVVQLsQDRVLHPLEEFHKVNAYVRFCEVSPYHKF 534
                      799**************************9999879*******************.6666644436666666667888888888********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                      +h+taNqaIle +egee +HiiDf+++ G+QW+++lq +a  R+  +  p++R+T+vg      ++++++tg +L +fA+ + +  +f+ l
  Pp3c12_10V3.7.p 535 AHFTANQAILETLEGEESIHIIDFQMGAGAQWASFLQDIAcLRAagKAVPTVRLTVVGT----GADQIHATGANLCNFARLMSMLWNFRQL 621
                      ****************************************7777766689*********....9******************999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.112415634IPR005202Transcription factor GRAS
PfamPF035144.7E-47442621IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MVITAGSSGG AGSGSESTRI NQMRAAEEQW WVDVLAPVSV IGSSAVSQQE SVAPNANVEF  60
GVPRLYVEEP DNMLFAQPAD PIVMKLLMGD GQFCGQGDIQ SVQRSRDIDT VMFEQDSWSS  120
NQHQMCHHLG DKPPSRLTLP DHFTGGTFSS FLNSSVSLAP SIPNSDSHAS FTSLPRALSL  180
PSQLHDIPHN YPKGTGVSVL STTTTPVASM SRPIGHPYLA SSSFLDAMSV PPNASARGDC  240
VAQSPLLGNS IYEDQLSQRN ALTVDQTSLV MEERSVSMQG SLLSSPSSLY AVHLNFPSTT  300
PAYHHQEPEE GFEHRGILQR SFSSLPSTAS QNQRIKAPAM MSGDYLHQLS WNAGRMSPQW  360
QKLAPLNRSL RATGERKRET INDRTLGALS PLSTVPGFCL GRPQDPGDSC EQVGVELKQE  420
DVNLDTESID GGVIPEGGLA IVNLLLRAAE AVDNGDAEMA KAILARLNQH ISPSREQSIQ  480
RVAHYFREAL ETRIMGWENF VVQLSQDRVL HPLEEFHKVN AYVRFCEVSP YHKFAHFTAN  540
QAILETLEGE ESIHIIDFQM GAGAQWASFL QDIACLRAAG KAVPTVRLTV VGTGADQIHA  600
TGANLCNFAR LMSMLWNFRQ LSLDPNALKY QCFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2044761825192Protein SCARECROW
5b3h_A3e-2044761824191Protein SCARECROW
5b3h_D3e-2044761824191Protein SCARECROW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.164740.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1JNY50.0A0A2K1JNY5_PHYPA; Uncharacterized protein
STRINGPP1S205_1V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-27GRAS family protein