PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_10V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 540aa    MW: 59216.6 Da    PI: 6.2256
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_10V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1619.9e-503475262181
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      v+lLl++Aeav++gd+e+a+a+Larl+++ sp++ +++qR+a+yf eAL++r+++ +++ + +l + +  ++ ++ ++++a+  f evsP++kf
  Pp3c12_10V3.4.p 347 VNLLLRAAEAVDNGDAEMAKAILARLNQHISPSReQSIQRVAHYFREALETRIMG-WENFVVQLsQDRVLHPLEEFHKVNAYVRFCEVSPYHKF 439
                      799**************************9999879*******************.6666644436666666667888888888********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                      +h+taNqaIle +egee +HiiDf+++ G+QW+++lq +a  R+  +  p++R+T+vg      ++++++tg +L +fA+ + +  +f+ l
  Pp3c12_10V3.4.p 440 AHFTANQAILETLEGEESIHIIDFQMGAGAQWASFLQDIAcLRAagKAVPTVRLTVVGT----GADQIHATGANLCNFARLMSMLWNFRQL 526
                      ****************************************7777766689*********....9******************999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.112320539IPR005202Transcription factor GRAS
PfamPF035143.4E-47347526IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGDIQSVQRS RDIDTVMFEQ DSWSSNQHQM CHHLGDKPPS RLTLPDHFTG GTFSSFLNSS  60
VSLAPSIPNS DSHASFTSLP RALSLPSQLH DIPHNYPKGT GVSVLSTTTT PVASMSRPIG  120
HPYLASSSFL DAMSVPPNAS ARGDCVAQSP LLGNSIYEDQ LSQRNALTVD QTSLVMEERS  180
VSMQGSLLSS PSSLYAVHLN FPSTTPAYHH QEPEEGFEHR GILQRSFSSL PSTASQNQRI  240
KAPAMMSGDY LHQLSWNAGR MSPQWQKLAP LNRSLRATGE RKRETINDRT LGALSPLSTV  300
PGFCLGRPQD PGDSCEQVGV ELKQEDVNLD TESIDGGVIP EGGLAIVNLL LRAAEAVDNG  360
DAEMAKAILA RLNQHISPSR EQSIQRVAHY FREALETRIM GWENFVVQLS QDRVLHPLEE  420
FHKVNAYVRF CEVSPYHKFA HFTANQAILE TLEGEESIHI IDFQMGAGAQ WASFLQDIAC  480
LRAAGKAVPT VRLTVVGTGA DQIHATGANL CNFARLMSML WNFRQLSLDP NALKYQCFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2035252324191Protein SCARECROW
5b3h_D2e-2035252324191Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.164740.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1JNY50.0A0A2K1JNY5_PHYPA; Uncharacterized protein
STRINGPP1S205_1V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-28GRAS family protein