PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_10V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 456aa MW: 50501.8 Da PI: 5.9305 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 161.5 | 6.9e-50 | 263 | 442 | 2 | 181 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 v+lLl++Aeav++gd+e+a+a+Larl+++ sp++ +++qR+a+yf eAL++r+++ +++ + +l + + ++ ++ ++++a+ f evsP++kf Pp3c12_10V3.1.p 263 VNLLLRAAEAVDNGDAEMAKAILARLNQHISPSReQSIQRVAHYFREALETRIMG-WENFVVQLsQDRVLHPLEEFHKVNAYVRFCEVSPYHKF 355 799**************************9999879*******************.6666644436666666667888888888********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 +h+taNqaIle +egee +HiiDf+++ G+QW+++lq +a R+ + p++R+T+vg ++++++tg +L +fA+ + + +f+ l Pp3c12_10V3.1.p 356 AHFTANQAILETLEGEESIHIIDFQMGAGAQWASFLQDIAcLRAagKAVPTVRLTVVGT----GADQIHATGANLCNFARLMSMLWNFRQL 442 ****************************************7777766689*********....9******************999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.112 | 236 | 455 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-47 | 263 | 442 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MGDIQSVQRS RDIDTVMFEQ DSWSSNQHQM CHHLGDKPPS RLTLPDHFTG VPPNASARGD 60 CVAQSPLLGN SIYEDQLSQR NALTVDQTSL VMEERSVSMQ GSLLSSPSSL YAVHLNFPST 120 TPAYHHQEPE EGFEHRGILQ RSFSSLPSTA SQNQRIKAPA MMSGDYLHQL SWNAGRMSPQ 180 WQKLAPLNRS LRATGERKRE TINDRTLGAL SPLSTVPGFC LGRPQDPGDS CEQVGVELKQ 240 EDVNLDTESI DGGVIPEGGL AIVNLLLRAA EAVDNGDAEM AKAILARLNQ HISPSREQSI 300 QRVAHYFREA LETRIMGWEN FVVQLSQDRV LHPLEEFHKV NAYVRFCEVS PYHKFAHFTA 360 NQAILETLEG EESIHIIDFQ MGAGAQWASF LQDIACLRAA GKAVPTVRLT VVGTGADQIH 420 ATGANLCNFA RLMSMLWNFR QLSLDPNALK YQCFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-21 | 268 | 439 | 25 | 192 | Protein SCARECROW |
5b3h_A | 4e-21 | 268 | 439 | 24 | 191 | Protein SCARECROW |
5b3h_D | 4e-21 | 268 | 439 | 24 | 191 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16474 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1JNY5 | 0.0 | A0A2K1JNY5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S205_1V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 3e-28 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_10V3.1.p |