PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c12_10900V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 323aa MW: 35142.4 Da PI: 6.0546

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c12_10900V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.5	7.5e-34	69	123	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+ave+LGG++kAtPk+++++m+vkgLtl+h+kSHLQk+Rl Pp3c12_10900V3.1.p 69 KPRLRWTPELHERFVDAVERLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKFRL 123 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.751	66	126	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-32	67	124	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-17	69	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-24	69	124	IPR006447	Myb domain, plants
Pfam	PF00249	7.5E-9	71	121	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-23	166	212	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MFVISQEDLE AKDGKENITR MYQTLMKQYP SVGIVPASGA QSASSNQDMP SMYGASFSSN 60 GRASSPDPKP RLRWTPELHE RFVDAVERLG GADKATPKSV MRVMGVKGLT LYHLKSHLQK 120 FRLGKQLHPE NSGHEGGKGG SSDIQVTSNA CSDEPSTSKA LNQEGFQISE AIRMQMEAQR 180 RLQEQLEVQR ELQLRIEAQG KYLQTILEKA KEALGRQIGE SPGLETVHAK LTELVSKVNI 240 EPMNMSFPPF TSVEAPTHIA DTNISTLPCQ EPRISDSSSQ KSHVTNVAAN PEDSGDASAS 300 CENHPSIDTL LSPTQGLQSI AE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	69	125	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	69	125	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	69	125	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	69	125	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	69	125	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	69	125	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	69	125	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	69	125	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	69	125	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	69	125	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	69	125	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	69	125	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11429	0.0	gametophore\| protonema

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391144.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024391145.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024391146.1	0.0	protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	4e-65	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2K1JQM3	0.0	A0A2K1JQM3_PHYPA; Uncharacterized protein
STRING	PP1S13_270V6.1	1e-163	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-51	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c12_10900V3.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]