PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_8790V3.1.p

Common Name

PHYPADRAFT_76816

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2317aa MW: 254516 Da PI: 6.2341

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_8790V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	1068	1109	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WTteE +++++ ++++ + +k Ia+ + +t +c+++++ Pp3c11_8790V3.1.p 1068 PWTTEEKKIFAEKFALHRKS-FKEIASNLK-YKTTADCIEYYYR 1109 8***************88.****9.9********85 PP
2	Myb_DNA-binding	33.2	1.2e-10	1300	1342	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE el+ av+ +G++ +++Ia+++g + l qck ++ k Pp3c11_8790V3.1.p 1300 QWTDEERELFTSAVATYGKD-FRLIASHVG-SKNLSQCKAFFSKT 1342 6***************99.*****.99****999876 PP
3	Myb_DNA-binding	30.1	1.1e-09	1635	1676	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++ +++G++ W++ + ++ ++l q+k ++q+ Pp3c11_8790V3.1.p 1635 SWTQEEKEKFAVILQEHGKD-WALLHESLP-SKSLTQIKTYFQN 1676 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.99E-11	1053	1115	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-4	1062	1114	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.759	1064	1115	IPR017884	SANT domain
SMART	SM00717	2.1E-7	1065	1113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-6	1067	1109	IPR001005	SANT/Myb domain
CDD	cd00167	8.40E-6	1068	1110	No hit	No description
PROSITE profile	PS51293	17.479	1296	1347	IPR017884	SANT domain
SMART	SM00717	7.5E-10	1297	1345	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.12E-11	1298	1348	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-7	1299	1344	IPR009057	Homeodomain-like
Pfam	PF00249	5.6E-8	1300	1341	IPR001005	SANT/Myb domain
CDD	cd00167	2.45E-7	1301	1339	No hit	No description
SuperFamily	SSF46689	7.33E-11	1625	1680	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-7	1628	1679	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.811	1631	1682	IPR017884	SANT domain
SMART	SM00717	1.2E-8	1632	1680	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-8	1635	1676	IPR001005	SANT/Myb domain
CDD	cd00167	6.52E-6	1635	1678	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2317 aa Download sequence Send to blast
MDKEVKEVSQ PQVFPVREGK MEAGLHCMSP LAQRALCHEP SCDRMQLPAT IHSVMAEATN 60 DTGERISRVR SGPFSSSVQP KSANLIRTAP PIGKKVIRGR LEAWRGRFDN VWDDHDSGNS 120 SWHGPTRDNR KSDETRRERE DRELRRNDDR DRKEEREQRR SDERSERDEP RRVRSATFGS 180 ERVFSSIRGL TAMDDRERDR DRDYRQGGRS GDDSGRMIQR ERSFNGAISS ISDRSSVTQF 240 GSGKDWSVGD KRSDLSRFER YGTGNRDGSR AEYEGHGRDS SFTNGWRRER SHSGVTARHS 300 SFAFGNKNFG EHGSRGSLLL SSGHDSHYAT TLSSNHDSDH PSPSKRPRLG WGQGLAKYEK 360 KVGDTDDVSP PVEKHDTKKD AESEAHRHVE EFEENRDMLD EKRSEIVPSG GSLDASLDLH 420 KKRPMPGVHY ENKQEDKEGI TDCLEKQEKS ENKSILWRDG GGRERSGQDK NSCALYGDGM 480 GIKGEDEKKA ALSEELLGLE QSPAPPLLLE DCANSTREEM SDSKPALPND TKVSEPNAQD 540 PVSHVLVKGS QNRTEHDDVT LPVLQEHESL EGKDQSLVSS VVVGENEVRG GDLMKSSSLV 600 EMREEVIEDR PKNVISLTES LQCSVDAKMV CLSSSQSSPT SVSTRFEKSP IHSERDAITI 660 PALCERKETE EGLFLSRESS MTSVPEGFVV ELMSEGTPPV SMDLDEDKNV KDVLELVPVE 720 AISDSTDEVK DVKLVMELVP VEALPESIGE DKDVRSLPHE LMSAGVPSIV EKAKDVRGVA 780 PETVSANVPP EPMILDTDKG IGGMSLELMQ SGVPLESMIV DNDEVIGGEL SGSMAQSLGS 840 EEPDYYKNQF GSEVVPRRSL RLECDLSMID SFLMENKEKA RLAGASFVHL LPLSLTGDIQ 900 QQLYHSPTEA PVWQRNIETH KNIQDRLLRK LAERHHFCKF KERVLTLRFR ALKEAWKREQ 960 KGLFERKNRP KAVDRRDIER RSNHGPPSQR SSLRLRPFSL SRLDVESEAA EAMKKLMKDP 1020 HVEAFCPVLK MPAMILDEKE RASRRFVSRN ALVEDPVAVE MERKILNPWT TEEKKIFAEK 1080 FALHRKSFKE IASNLKYKTT ADCIEYYYRN HKSEDFDKSK KGVHSKDRGD HTKTSSTFLT 1140 PTSAGIKRNH EANCARLEAI NVVNMNTKLS QINSPVLEHA KPTTLSNGPL PVPAGADIPR 1200 LNLKESEVPE VVLPSGATAE IATVETATSS LMSTPCSVSS TPAPVTDQWN GRSSVKERVG 1260 RGLSTTRCFL SERHPAGPKG TRSTHLRRLS SRAAAQEDSQ WTDEERELFT SAVATYGKDF 1320 RLIASHVGSK NLSQCKAFFS KTRKRLGLDE LVEQFEANEA AAMLMQSFRH EADLVQEAKL 1380 ISSAEDMQMD SSAGVLAHSV EELSDTAAAV STLESLKVQS KCLTNDMSDL SLVADAAAVM 1440 EEITLEKSEC TAQDLFSNEK SLTQSEELAH ELLKVDPSNC TVLPARIRQE EENDSEATKS 1500 DDSYQVGAET ESDIVVDQAA AALLGMSEMS ADAPGLKKSK SEAKICTKSS PVSVFSRSQS 1560 ARLPTSSPPS HSVMEVNLSL TSERNSRQLK ERVNPTVSCK PTTRERPQDM LDAHTGRKSR 1620 EVVGGEPKPR REPTSWTQEE KEKFAVILQE HGKDWALLHE SLPSKSLTQI KTYFQNSKAR 1680 SRLPASDKLL NVARSDVGNR KRKADEFDST RKAAELALPL KQKVRGNVAP PEFDNSNHKE 1740 DSLLGSSSVS GTAGVGVDIL PYAARFGSFP SQPVGQDTLN INGMHSVRQM PTSNYSQGTT 1800 QDGHQVFRPG ERPSLPNPVA TRSHHGDVVL QQFSDPGLSM TGDPDLQGLS QGVVPQAGPP 1860 AAIHQVAQQV QQMLAQQQHL QKQLALLLQQ QAALPQALLP QHQQATQQTL QAVRPLEKKL 1920 HQVVQQLQHQ QALAQNQEMG IHNHMHFQQQ QLPQGRGILK VKPIRGAISK PLSDLAGSPS 1980 QGVFQNQCNS RNQDIQLHQQ GHSLLLGIGT NPAVTAGSTA GLLKNHAKTL DVQDSDTDSD 2040 CEGMGSMQMV ADDSHQRMSV VHSTSSGQQQ GAAQSTTSTL SSDSEQVKSW DVKLFGQSLL 2100 SKPPSLPSSV PRTAGSSMQE FVKPSTSSPA TSVTFPTGTL SKGFRSSESL PSAFGRVGAS 2160 SSVADGQLVP WAGMTNLSGK LSQYGAWSTT NSLQVSGVTE AAGKEPDSVS TQEAATSVAS 2220 QSDRQHTDAQ VLVSAPEQGL QGNDEHRDSE SGLSAGQSET PVCGTAVAES PFLDGSQNRS 2280 IEHVSSPDAD QCRIGLEPTS HINSLPTISA GPGQWG*

Sequence ? help Back to Top

Protein Sequence Length: 2317 aa Download sequence Send to blast

MDKEVKEVSQ PQVFPVREGK MEAGLHCMSP LAQRALCHEP SCDRMQLPAT IHSVMAEATN  60
DTGERISRVR SGPFSSSVQP KSANLIRTAP PIGKKVIRGR LEAWRGRFDN VWDDHDSGNS  120
SWHGPTRDNR KSDETRRERE DRELRRNDDR DRKEEREQRR SDERSERDEP RRVRSATFGS  180
ERVFSSIRGL TAMDDRERDR DRDYRQGGRS GDDSGRMIQR ERSFNGAISS ISDRSSVTQF  240
GSGKDWSVGD KRSDLSRFER YGTGNRDGSR AEYEGHGRDS SFTNGWRRER SHSGVTARHS  300
SFAFGNKNFG EHGSRGSLLL SSGHDSHYAT TLSSNHDSDH PSPSKRPRLG WGQGLAKYEK  360
KVGDTDDVSP PVEKHDTKKD AESEAHRHVE EFEENRDMLD EKRSEIVPSG GSLDASLDLH  420
KKRPMPGVHY ENKQEDKEGI TDCLEKQEKS ENKSILWRDG GGRERSGQDK NSCALYGDGM  480
GIKGEDEKKA ALSEELLGLE QSPAPPLLLE DCANSTREEM SDSKPALPND TKVSEPNAQD  540
PVSHVLVKGS QNRTEHDDVT LPVLQEHESL EGKDQSLVSS VVVGENEVRG GDLMKSSSLV  600
EMREEVIEDR PKNVISLTES LQCSVDAKMV CLSSSQSSPT SVSTRFEKSP IHSERDAITI  660
PALCERKETE EGLFLSRESS MTSVPEGFVV ELMSEGTPPV SMDLDEDKNV KDVLELVPVE  720
AISDSTDEVK DVKLVMELVP VEALPESIGE DKDVRSLPHE LMSAGVPSIV EKAKDVRGVA  780
PETVSANVPP EPMILDTDKG IGGMSLELMQ SGVPLESMIV DNDEVIGGEL SGSMAQSLGS  840
EEPDYYKNQF GSEVVPRRSL RLECDLSMID SFLMENKEKA RLAGASFVHL LPLSLTGDIQ  900
QQLYHSPTEA PVWQRNIETH KNIQDRLLRK LAERHHFCKF KERVLTLRFR ALKEAWKREQ  960
KGLFERKNRP KAVDRRDIER RSNHGPPSQR SSLRLRPFSL SRLDVESEAA EAMKKLMKDP  1020
HVEAFCPVLK MPAMILDEKE RASRRFVSRN ALVEDPVAVE MERKILNPWT TEEKKIFAEK  1080
FALHRKSFKE IASNLKYKTT ADCIEYYYRN HKSEDFDKSK KGVHSKDRGD HTKTSSTFLT  1140
PTSAGIKRNH EANCARLEAI NVVNMNTKLS QINSPVLEHA KPTTLSNGPL PVPAGADIPR  1200
LNLKESEVPE VVLPSGATAE IATVETATSS LMSTPCSVSS TPAPVTDQWN GRSSVKERVG  1260
RGLSTTRCFL SERHPAGPKG TRSTHLRRLS SRAAAQEDSQ WTDEERELFT SAVATYGKDF  1320
RLIASHVGSK NLSQCKAFFS KTRKRLGLDE LVEQFEANEA AAMLMQSFRH EADLVQEAKL  1380
ISSAEDMQMD SSAGVLAHSV EELSDTAAAV STLESLKVQS KCLTNDMSDL SLVADAAAVM  1440
EEITLEKSEC TAQDLFSNEK SLTQSEELAH ELLKVDPSNC TVLPARIRQE EENDSEATKS  1500
DDSYQVGAET ESDIVVDQAA AALLGMSEMS ADAPGLKKSK SEAKICTKSS PVSVFSRSQS  1560
ARLPTSSPPS HSVMEVNLSL TSERNSRQLK ERVNPTVSCK PTTRERPQDM LDAHTGRKSR  1620
EVVGGEPKPR REPTSWTQEE KEKFAVILQE HGKDWALLHE SLPSKSLTQI KTYFQNSKAR  1680
SRLPASDKLL NVARSDVGNR KRKADEFDST RKAAELALPL KQKVRGNVAP PEFDNSNHKE  1740
DSLLGSSSVS GTAGVGVDIL PYAARFGSFP SQPVGQDTLN INGMHSVRQM PTSNYSQGTT  1800
QDGHQVFRPG ERPSLPNPVA TRSHHGDVVL QQFSDPGLSM TGDPDLQGLS QGVVPQAGPP  1860
AAIHQVAQQV QQMLAQQQHL QKQLALLLQQ QAALPQALLP QHQQATQQTL QAVRPLEKKL  1920
HQVVQQLQHQ QALAQNQEMG IHNHMHFQQQ QLPQGRGILK VKPIRGAISK PLSDLAGSPS  1980
QGVFQNQCNS RNQDIQLHQQ GHSLLLGIGT NPAVTAGSTA GLLKNHAKTL DVQDSDTDSD  2040
CEGMGSMQMV ADDSHQRMSV VHSTSSGQQQ GAAQSTTSTL SSDSEQVKSW DVKLFGQSLL  2100
SKPPSLPSSV PRTAGSSMQE FVKPSTSSPA TSVTFPTGTL SKGFRSSESL PSAFGRVGAS  2160
SSVADGQLVP WAGMTNLSGK LSQYGAWSTT NSLQVSGVTE AAGKEPDSVS TQEAATSVAS  2220
QSDRQHTDAQ VLVSAPEQGL QGNDEHRDSE SGLSAGQSET PVCGTAVAES PFLDGSQNRS  2280
IEHVSSPDAD QCRIGLEPTS HINSLPTISA GPGQWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	3e-15	1031	1116	9	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	3e-15	1031	1116	9	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024387952.1	0.0	uncharacterized protein LOC112288212 isoform X2
TrEMBL	A0A2K1JU21	0.0	A0A2K1JU21_PHYPA; Uncharacterized protein
STRING	PP1S61_39V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-41	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c11_8790V3.1.p
Entrez Gene	5926629

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]