PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_6370V3.1.p | ||||||||
Common Name | PHYPADRAFT_226476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | CO-like | ||||||||
Protein Properties | Length: 369aa MW: 39674.7 Da PI: 7.1383 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.6 | 1.6e-05 | 3 | 42 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 + C+ ++ + +C+ + +lC C + H g H Pp3c11_6370V3.1.p 3 KSCDACQASSAVVYCRADAAYLCLGCDGKVH-GanklasrH 42 67*****999****************99999.435555555 PP | |||||||
2 | zf-B_box | 23.1 | 1.6e-07 | 44 | 90 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e + C+ + lC +C + +H+ H++vp+ Pp3c11_6370V3.1.p 44 RLWMCEVCEVAAAVVTCKADAASLCVSCDTDIHSAnplaqrHERVPV 90 5689*****999*********************66899999999986 PP | |||||||
3 | CCT | 69.6 | 8.2e-24 | 301 | 344 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKr++RkFeK+irY+sRKa+AesRpR+KGrF+k++ Pp3c11_6370V3.1.p 301 REARVMRYKEKRQKRKFEKTIRYASRKAYAESRPRIKGRFTKRT 344 9****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.456 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.33E-5 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 10.367 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-5 | 45 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.94E-7 | 46 | 90 | No hit | No description |
SMART | SM00336 | 4.7E-9 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.42 | 301 | 343 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.5E-18 | 301 | 343 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MPKSCDACQA SSAVVYCRAD AAYLCLGCDG KVHGANKLAS RHERLWMCEV CEVAAAVVTC 60 KADAASLCVS CDTDIHSANP LAQRHERVPV QPLFDCVSQF RGTHFSVLAP KNECNNNLLK 120 GDEDPAVAEA VSWLLPHPKT LSSAILRGIA AADEAPAFPF RERPFSPKLK KLKVEQAADI 180 YSDVDPFLVL DGGNGTGFQP DSMVPVHIPE GPDDSPSLAN STAPSSAINF RASQKSGCSY 240 GTSTLTHSMS CSSVDAAVVP DSSLSDISTP YSKALDSQDS QDLSGALVPH QASKPIDTVD 300 REARVMRYKE KRQKRKFEKT IRYASRKAYA ESRPRIKGRF TKRTDSDVEQ MFSSCTADSG 360 FGVVPSSC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1114 | 0.0 | gametophore| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ890108 | 0.0 | AJ890108.1 Physcomitrella patens col-3 gene for CONSTANS-like 3, exons 1-3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388548.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4-like | ||||
TrEMBL | A9TXS8 | 0.0 | A9TXS8_PHYPA; Predicted protein | ||||
STRING | PP1S364_5V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 2e-69 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_6370V3.1.p |
Entrez Gene | 5946617 |
Publications ? help Back to Top | |||
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