PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_3110V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 883aa    MW: 98703.1 Da    PI: 6.3662
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_3110V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07823877247
                        SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                        ++WT  E++ l+++v+++  +     +Wk+I +         Rt+ ++k++w+++
  Pp3c11_3110V3.1.p 823 LPWTRAEEDALKEGVRLYSYNgawgfQWKRILEFGEgrfdPSRTDVDLKDKWRNL 877
                        69******************************99889****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.08E-12485548IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-10496552IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.698500549IPR019787Zinc finger, PHD-finger
SMARTSM002490.0019502547IPR001965Zinc finger, PHD-type
SuperFamilySSF466891.3E-8819879IPR009057Homeodomain-like
PROSITE profilePS500907.503824878IPR017877Myb-like domain
CDDcd116602.31E-13824879No hitNo description
Gene3DG3DSA:1.10.10.601.2E-9824879IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MEACLSTMEL QASALMPGLA WKWILEKLLD LPDFGVAFIN EVITTHVTDI EEPYCRPLLE  60
RVALRNLQEM VLTDQIDSGA IPLLKALIIQ DFVPLTKGSS VKQRFNKELV LRVQTEIVLS  120
VLREDVAEGD KDWVYYASEL ERIFAEEADP RVLARKRELS ALLKSKDQTN DVAAYLKKYS  180
LKKLKNDLNM FIDERRATFK TVFLDQLSRD FLDSNGTPFL EALGDMEKSG ELDPRAKQAH  240
LNPANVVSLQ TNQDIDLQRV GHESRNGHDM TETGGQGIVL GTAAVSDKKS PRRMILPTRD  300
SSDDVSQEVQ NCNVASKQSK TPTSVSLAVP SKEGMPLSRN FGLEVMRSCS PHLSVSIEGE  360
KIHQTRKPSR TNKNVTISGV ESDADTQVVE RLNIDDEKCE GEGYRKEGAQ SPSHSESGSD  420
RRHFQKTVAT QVVRRKTTGL PSERRTLEPD RKRASTCSPE AKIAERRDNE KSVIKNESLP  480
LDAEEIYEVD YLDIGDDGQE EICHKCGLDG DLTCCDRCPI SMHLKCIEVL GLRVPKSNED  540
WCCPICVAVK ASQGAREAAK AAAVAREELK AFIKESSKKR SFSEDDAQYH SGQEKAVKRS  600
KSSLIPPQPD DIDTTLKLQH NSEENPELRY TDAQLDSGRR NESLLPILRK SSNQLKQRGE  660
VESESTGLNL SSVGIALRVN QKFSNGSPKS LVKYDPDSIQ RGPAKAVPFN EDMKKVQRVP  720
DTPDQNTSRR HPIAASTSGR KRKKTDIYRR VAKRKVLEDD SDEASLQREA GVQEPGSGAG  780
GCGEVDGDDL ELDEDCVGKS EYVERSGYFS GRRRIPGRRR IPLPWTRAEE DALKEGVRLY  840
SYNGAWGFQW KRILEFGEGR FDPSRTDVDL KDKWRNLVKG VS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1739743RKRKK
2748754RRVAKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388799.10.0uncharacterized protein LOC112288631
RefseqXP_024388800.10.0uncharacterized protein LOC112288631
TrEMBLA0A2K1JTA20.0A0A2K1JTA2_PHYPA; Uncharacterized protein
STRINGPP1S39_365V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1443713