PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_24520V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 530aa    MW: 57997 Da    PI: 5.0354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_24520V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-172473255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrd +    r r +lg+f+tae+Aa a++ a+++++g
  Pp3c11_24520V3.2.p 24 RYRGVRKRP-WGRYAAEIRDSN---TRERRWLGTFDTAEQAALAYDSAARSMRG 73
                        69*******.**********42...25999**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-282481IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-202482IPR016177DNA-binding domain
SMARTSM003805.6E-332487IPR001471AP2/ERF domain
PfamPF008474.7E-122473IPR001471AP2/ERF domain
CDDcd000181.86E-282480No hitNo description
PROSITE profilePS5103221.2852481IPR001471AP2/ERF domain
PRINTSPR003673.6E-92536IPR001471AP2/ERF domain
PRINTSPR003673.6E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MCSREREKVN KAENPRVKKP LEGRYRGVRK RPWGRYAAEI RDSNTRERRW LGTFDTAEQA  60
ALAYDSAARS MRGPKARTNF VYSAHHTCVF SAALAVSGTS KENLLRSVDS RPRKFDWFSA  120
LSRSESQRVF VDYNDIGAAH QPSVKSSLDY TEVLKNIERL ASAISDPPRS QRVNGLPQTS  180
SASRNHLQGI DSKDTSMKRS SWLPLDSASQ VSNPTPTEDE VDKVANSTTP KSNLSCSTVF  240
QPSCEVPWKG FNVGSQQGNV SESGGSTTLD NVVDSMITCH EVTRTLPQNH PYNSFGVGTG  300
SIDQVVSQFV ESSPSVVTAG TSSTLAFNSD QCSFSTQISY SDDSSMSMAS PPADTASFLD  360
SGVLSRSSEV ECLLEARTDE VCSCSSYGLI NPSQNPDNLQ CMLPLSMRTS SLVPHDLYAE  420
SSASCSLQPP AATTGVVHSS DNFPHISEQD QSKTWSTLCE LPASWDSSGF LASESIYEKP  480
HLATAWTSEC IDLVQPSTLW GYDDCYTYEY LPSFPIFEVW KSSDTTIEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2123801371Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388171.10.0uncharacterized protein LOC112288315
TrEMBLA0A2K1JW430.0A0A2K1JW43_PHYPA; Uncharacterized protein
STRINGPP1S138_190V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-29ERF family protein