PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_24520V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 530aa MW: 57997 Da PI: 5.0354 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.2e-17 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd + r r +lg+f+tae+Aa a++ a+++++g Pp3c11_24520V3.1.p 24 RYRGVRKRP-WGRYAAEIRDSN---TRERRWLGTFDTAEQAALAYDSAARSMRG 73 69*******.**********42...25999**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-28 | 24 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 24 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.6E-33 | 24 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-12 | 24 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.86E-28 | 24 | 80 | No hit | No description |
PROSITE profile | PS51032 | 21.285 | 24 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-9 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-9 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MCSREREKVN KAENPRVKKP LEGRYRGVRK RPWGRYAAEI RDSNTRERRW LGTFDTAEQA 60 ALAYDSAARS MRGPKARTNF VYSAHHTCVF SAALAVSGTS KENLLRSVDS RPRKFDWFSA 120 LSRSESQRVF VDYNDIGAAH QPSVKSSLDY TEVLKNIERL ASAISDPPRS QRVNGLPQTS 180 SASRNHLQGI DSKDTSMKRS SWLPLDSASQ VSNPTPTEDE VDKVANSTTP KSNLSCSTVF 240 QPSCEVPWKG FNVGSQQGNV SESGGSTTLD NVVDSMITCH EVTRTLPQNH PYNSFGVGTG 300 SIDQVVSQFV ESSPSVVTAG TSSTLAFNSD QCSFSTQISY SDDSSMSMAS PPADTASFLD 360 SGVLSRSSEV ECLLEARTDE VCSCSSYGLI NPSQNPDNLQ CMLPLSMRTS SLVPHDLYAE 420 SSASCSLQPP AATTGVVHSS DNFPHISEQD QSKTWSTLCE LPASWDSSGF LASESIYEKP 480 HLATAWTSEC IDLVQPSTLW GYDDCYTYEY LPSFPIFEVW KSSDTTIEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 23 | 80 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388171.1 | 0.0 | uncharacterized protein LOC112288315 | ||||
TrEMBL | A0A2K1JW43 | 0.0 | A0A2K1JW43_PHYPA; Uncharacterized protein | ||||
STRING | PP1S138_190V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 8e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_24520V3.1.p |