PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_23320V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 252aa    MW: 27992.6 Da    PI: 9.5959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_23320V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-1287132454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ah  +Er+RR+++ ++f +Lr+l+P+      +K++K++ L  Av Y+++L
  Pp3c11_23320V3.1.p  87 AHARNERNRRQKLHDRFMTLRSLVPNI-----TKPDKVSLLGDAVLYVQDL 132
                         899***********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.91983132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1586150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1486143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-987132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.93E-987136No hitNo description
SMARTSM003533.0E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MTTGQTRRSA FKRWSPTDPM AVLRSSPKFQ QHLLKAALFT VPRAHATKKE EVQIQYSNEA  60
ETSAQLYSGM RSFRGGPYSS GGSSISAHAR NERNRRQKLH DRFMTLRSLV PNITKPDKVS  120
LLGDAVLYVQ DLHRRVTELE ASKAPTPKTP TEPRVEVTIE KNTAYLKLSS PWQDGLIIHI  180
LERLHDFHLE VVDVSARVSH DAVLNAQLKA KVMSSTDGDD NDDDEEEVAK TASTIEATLL  240
STIANVMSSA R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389665.10.0basic helix-loop-helix protein A-like isoform X2
TrEMBLA0A2K1JVY20.0A0A2K1JVY2_PHYPA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-24bHLH family protein