PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_23290V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 489aa    MW: 54311.2 Da    PI: 6.4651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_23290V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.3e-21185234255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+++taeeAa+a+++a+k+++g
  Pp3c11_23290V3.2.p 185 KYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTYDTAEEAAQAYDKAAKEFRG 234
                         8********.**********94....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-31184243IPR001471AP2/ERF domain
PROSITE profilePS5103225.027185242IPR001471AP2/ERF domain
SMARTSM003801.5E-36185248IPR001471AP2/ERF domain
CDDcd000181.13E-34185243No hitNo description
PfamPF008476.7E-15185234IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22185243IPR016177DNA-binding domain
PRINTSPR003672.1E-11186197IPR001471AP2/ERF domain
PRINTSPR003672.1E-11208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MIQVCRLPMS DQPEFSNLPE IHIPPDPIPT SVNSTRRGIP NPVSEVSMIV YALTQAAGRE  60
ASRVPDHGYG TPWADTSRMV SITRGSYSEY VDVNRASATL WTPITENWSE QLQRSDSPCH  120
FQDTFPEPGH SGEFGSQQPH QHDTPSPDPH DSQMHESTFK QDKGMQSARM IPEETHSPEP  180
AKKRKYRGVR QRPWGKWAAE IRDPKKAARV WLGTYDTAEE AAQAYDKAAK EFRGLRARLN  240
FPDGVHMGIG SSSRTSPPSR VARGSSSGSL PASSSAAPTS LSPKSLIVES HRYHENHSVS  300
EDSSWNPPSR ASSSTDHSPV NSARSKFAPA QYSFGQSYLQ SGSNYQSTDN DPSPPTQHSD  360
AWEEMLRYPS HQDIMYYDSA PHYRYSPYGS QPSFSSPADA FSTSGSSIPT STSSYMVSRQ  420
QEVADSLTRE ALSLPFGSDQ YSYFQNSKNS SAPVLSYDQI FEQEPRTWPS SSAENLPPSY  480
DFPFYRRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22181248169ATERF1
3gcc_A2e-22181248169ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388275.10.0uncharacterized protein LOC112288386
TrEMBLA0A2K1JVY00.0A0A2K1JVY0_PHYPA; Uncharacterized protein
STRINGPP1S31_112V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.19e-24ERF family protein