PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_23240V3.3.p

Common Name

PHYPADRAFT_161252

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 1291aa MW: 141121 Da PI: 9.7115

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_23240V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.9e-09	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 +W++e+ el+++a++++G++ Wk++++ + +Rt +++ Pp3c11_23240V3.3.p 45 PWSEEDLELFYQAFRKYGKD-WKKVSASLH-KRTTEMV 80 8***************99.******.998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.02E-10	40	90	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-6	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-5	45	84	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-8	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	1.27E-6	45	88	No hit	No description
Pfam	PF06584	1.2E-32	678	778	IPR033471	DIRP domain
SMART	SM01135	8.0E-58	678	779	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 1291 aa Download sequence Send to blast
MASARRPRTT SKPTTRIAGG VDRDEDGIGK SKFRKRKLTD ILGPPWSEED LELFYQAFRK 60 YGKDWKKVSA SLHKRTTEMV EALYTTNKAY LSLPDGAASA TGLKAMMTDH YNLLVENPSA 120 GAESSDDCVG SDERSNHVQL SKKKVTNIGM ESSSIRSDGI VGASGFGGSS PAKRPRTYRN 180 RPVGKRTPRF QTSNASERRI RIIKASVSKL QNRVEEDSDS DVAAARTLVS KQSASPTASN 240 TPSRRSLRQT SFQQNGDKES LWRTESDASV KPTASTSQAD NQLEGSPESK DLQNEGATKA 300 SSSTLRSDAD RKTPTVGDAK SKLKKPFSKK TKFQNSDSKH QTSKSREKRK EDVKELVEAS 360 ERQGSGADEP AEGSSQPSSA QRRRRPVSPP PKQKKRSRQL FSGDSNSGLD ALATLAASSL 420 ELEGLELGEN LNVVANAAAS FEDKTEKVEI KGGKQSSPEV ANSKHDLKSS QAEDMQDLHN 480 GSKEEEGDLN TEEEGAASED RQPSTSPADS RKRKRKHSGD KISKVVASVP EGEASASPNP 540 WTKLKKLAGT KLLSSKQGHK LLKRWSESGV ADGADSPGHG KQISMEGRED LSIDIDESSL 600 PLKLRSKKKG VPEKLPTEKT SAPVKSNSGF NSPHQESVRK EQAFCPHTTP ELGTDSAKAK 660 IIHCLCPKVR RWCMCEWFYS AIDLPWFARN EFVEYLNHAG LGHVPRLTRV EWGVIRGSLG 720 KPRRLSKRFL QEEREKLETY RESVRTHYHE LRNGLREGLP ADLARPLTVG QKVIARHPKT 780 REIHDGSILT VDRSRCRVQF DRPELGVELV MDIDAMPMYP LENVPEVMRR HFTSVEGIER 840 TPGDDSKPRA WNASGGVGGV ARAALNERLE RRVTMLSQRF LSDLSKRAQT DTLDAVREAK 900 EVTNRAVREA KDVTTKSAVA SQRVGSHQPL GGFQAQAIEA DARALAELAR ALDKKEALVM 960 ELRQMNGEAS CNWEGFKAAD NFQRQYATVV LQLKEVNKQV TNALLLLRQR NKYHDNAVLP 1020 WHRLSSQGIS DVAEPSEPWV LDTTCALAEV TISARKQASL MVSTAVKAMD TLKAGEDAFQ 1080 KLGCALEAIS VPGCVSVPLQ LSPYPAPTCE VGGSQGVSTP SAQPGSRVQS SSSSITEDNS 1140 EVDTGTVAST SRLSPVDKNG SAQRPAALEA AAQDLMQDLN HAATQSSASR DCLFPMELIK 1200 SCIATLFMLQ TLSETPFSSA EVQQTLDSAL RTLRPKSAKN HAIYKEIEQQ FATVKAQITT 1260 QIPFPNSAPL SPFVDSMPSV APKPTPPNTL *

Sequence ? help Back to Top

Protein Sequence Length: 1291 aa Download sequence Send to blast

MASARRPRTT SKPTTRIAGG VDRDEDGIGK SKFRKRKLTD ILGPPWSEED LELFYQAFRK  60
YGKDWKKVSA SLHKRTTEMV EALYTTNKAY LSLPDGAASA TGLKAMMTDH YNLLVENPSA  120
GAESSDDCVG SDERSNHVQL SKKKVTNIGM ESSSIRSDGI VGASGFGGSS PAKRPRTYRN  180
RPVGKRTPRF QTSNASERRI RIIKASVSKL QNRVEEDSDS DVAAARTLVS KQSASPTASN  240
TPSRRSLRQT SFQQNGDKES LWRTESDASV KPTASTSQAD NQLEGSPESK DLQNEGATKA  300
SSSTLRSDAD RKTPTVGDAK SKLKKPFSKK TKFQNSDSKH QTSKSREKRK EDVKELVEAS  360
ERQGSGADEP AEGSSQPSSA QRRRRPVSPP PKQKKRSRQL FSGDSNSGLD ALATLAASSL  420
ELEGLELGEN LNVVANAAAS FEDKTEKVEI KGGKQSSPEV ANSKHDLKSS QAEDMQDLHN  480
GSKEEEGDLN TEEEGAASED RQPSTSPADS RKRKRKHSGD KISKVVASVP EGEASASPNP  540
WTKLKKLAGT KLLSSKQGHK LLKRWSESGV ADGADSPGHG KQISMEGRED LSIDIDESSL  600
PLKLRSKKKG VPEKLPTEKT SAPVKSNSGF NSPHQESVRK EQAFCPHTTP ELGTDSAKAK  660
IIHCLCPKVR RWCMCEWFYS AIDLPWFARN EFVEYLNHAG LGHVPRLTRV EWGVIRGSLG  720
KPRRLSKRFL QEEREKLETY RESVRTHYHE LRNGLREGLP ADLARPLTVG QKVIARHPKT  780
REIHDGSILT VDRSRCRVQF DRPELGVELV MDIDAMPMYP LENVPEVMRR HFTSVEGIER  840
TPGDDSKPRA WNASGGVGGV ARAALNERLE RRVTMLSQRF LSDLSKRAQT DTLDAVREAK  900
EVTNRAVREA KDVTTKSAVA SQRVGSHQPL GGFQAQAIEA DARALAELAR ALDKKEALVM  960
ELRQMNGEAS CNWEGFKAAD NFQRQYATVV LQLKEVNKQV TNALLLLRQR NKYHDNAVLP  1020
WHRLSSQGIS DVAEPSEPWV LDTTCALAEV TISARKQASL MVSTAVKAMD TLKAGEDAFQ  1080
KLGCALEAIS VPGCVSVPLQ LSPYPAPTCE VGGSQGVSTP SAQPGSRVQS SSSSITEDNS  1140
EVDTGTVAST SRLSPVDKNG SAQRPAALEA AAQDLMQDLN HAATQSSASR DCLFPMELIK  1200
SCIATLFMLQ TLSETPFSSA EVQQTLDSAL RTLRPKSAKN HAIYKEIEQQ FATVKAQITT  1260
QIPFPNSAPL SPFVDSMPSV APKPTPPNTL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	510	515	RKRKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.7535	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388270.1	0.0	protein ALWAYS EARLY 3-like isoform X1
Refseq	XP_024388271.1	0.0	protein ALWAYS EARLY 3-like isoform X1
Refseq	XP_024388272.1	0.0	protein ALWAYS EARLY 3-like isoform X1
TrEMBL	A0A2K1JVW8	0.0	A0A2K1JVW8_PHYPA; Uncharacterized protein
STRING	PP1S31_116V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	5e-79	DNA binding

Link Out ? help Back to Top
Phytozome	Pp3c11_23240V3.3.p
Entrez Gene	5921471

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]