PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21970V3.1.p
Common NamePHYPADRAFT_161304
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 419aa    MW: 45975.1 Da    PI: 7.3269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21970V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.5e-11228275355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k L+
  Pp3c11_21970V3.1.p 228 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKTLE 275
                         5699************************.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16228293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16229286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9229275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.09E-12230279No hitNo description
SMARTSM003531.9E-13231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MQWVTELGME DVRQFDPLFH QSNAEAYGGG LSSVSGSGNN YAACLESFKQ QKERQSFADL  60
DGLYHQERPQ KMLKSNSSMP TLNDFHYQAS PNWSMSMGLS SGLGGISFGS QQPLAQNPHQ  120
QVHQMIPQHL DAYAMSVQHL QEDSAVHPRT PGSQVDCGSS PVSVGTNGCK PDAVSVESLR  180
GSSPLSSIEY VQQGKQKSSG FFASNVSGSR LTMPPQPPPP VKSTGHTQDH IMAERKRREK  240
LSQRFIALSA IVPGLKKMDK ASVLGDAIKY VKTLEEKLKA LEERLPKKRM RSLSVKNMPP  300
VPPSSSNSQG CSKLAPAVKQ QLGEEVVDED DGSQPEIEAR KIDKNVLIRM HCEKRKSLLV  360
KSLAELEKMK LVILNANILS FSATTVDLTC CAHMTDGCDI NTDEIVRTLQ DLYYTLED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13229288868Transcription factor MYC2
5gnj_B8e-13229288868Transcription factor MYC2
5gnj_E8e-13229288868Transcription factor MYC2
5gnj_F8e-13229288868Transcription factor MYC2
5gnj_G8e-13229288868Transcription factor MYC2
5gnj_I8e-13229288868Transcription factor MYC2
5gnj_M8e-13229288868Transcription factor MYC2
5gnj_N8e-13229288868Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238ERKRRE
2234239RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.41940.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388682.10.0transcription factor bHLH83-like
RefseqXP_024388683.10.0transcription factor bHLH83-like
TrEMBLA9RVJ20.0A9RVJ2_PHYPA; Predicted protein
STRINGPP1S31_240V6.30.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-34bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]