PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21940V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 729aa    MW: 79029.3 Da    PI: 7.2763
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21940V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-1686184197
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +gr W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ + 
  Pp3c11_21940V3.2.p  86 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE- 174
                         89**************************555556778***************9989999999***9.********************765. PP

                         SEE..EEEEE CS
                  B3  88 sefelvvkvf 97 
                          +++lv++ +
  Pp3c11_21940V3.2.p 175 ADGKLVMGYR 184
                         5666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-2781186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-1883185IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-2084185No hitNo description
PROSITE profilePS5086310.68786187IPR003340B3 DNA binding domain
PfamPF023621.1E-1386185IPR003340B3 DNA binding domain
SMARTSM010191.4E-1686186IPR003340B3 DNA binding domain
PROSITE profilePS5105013.046320370IPR011124Zinc finger, CW-type
PfamPF074966.4E-10325367IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDCGGEGTES DKNVSLDRTK AGGAVGGGAA AGSSQSAGQG SLRVARPPGE GRGRNQLLPR  60
YWPRITDQEL KQINSGDTQT TITPLFEKML SASDAGRIGR LVLPKACAEA YFPPIHQPEG  120
LPLRIQDVTG RDWVFQFRFW PNNNSRMYVL EGVTPCIQSM KLHAGDTVTF SRLEADGKLV  180
MGYRKAPTSL SSQDAGATRV GPNASNGLSN PSSAVIQTAD GWASNVGAPK SKESGVSIGQ  240
LWSSQMDRKR GRPLGSKSKR LRLDSIDSML LKSNWEEAQE LLRPAPSASS TVITIDGHEF  300
EEYSEPPVLA KRTFITKAPS GAQEQWAQCD DCGTWRRVPV DAFVPARWSC SQNSWDQTRA  360
QCSAAQEVSS DKLEVLLGPG PTSEGGKQEY APKVTPTSRE ENVSTTSAAA GLDTLAQAAS  420
TSLSPVRTTK HPRHRPGCTC IVCIQPPSGK GPKHKASCIC NVCVTVKRRF RTLMQRRKKR  480
QCEREFEAFR NKREWQEEDA SEIADIGRAG TVDAANDVDD DLPTPPVCSR DGVSEDGPVK  540
GAIDLNIQPD HEERVSMVRL LQDAHLPLSA YLHQQRLSSL YVGDLVSDHV SNDATSSHED  600
TLSESSSKAE ADNELEVAGH VRHEAQRTQT SLGYVEQPNF VESWDARGVK PSEFSGDSVH  660
SSSSKFEFTM MNNVAASSAK KHVTGAGRGR QICIGCGEPI GSAAKERKNL DAELGQKYMF  720
RCCLCLNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-62631861123B3 domain-containing transcription repressor VAL1
5yzz_C5e-62631861123B3 domain-containing transcription repressor VAL1
5z00_C5e-62631861123B3 domain-containing transcription repressor VAL1
5z00_G5e-62631861123B3 domain-containing transcription repressor VAL1
5z00_K5e-62631861123B3 domain-containing transcription repressor VAL1
5z00_M5e-62631861123B3 domain-containing transcription repressor VAL1
6j9a_A5e-62631862124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1466478KRRFRTLMQRRKK
2466479KRRFRTLMQRRKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.28750.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388645.10.0B3 domain-containing transcription repressor VAL1-like isoform X1
SwissprotQ6Z3U31e-168Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K1JVP00.0A0A2K1JVP0_PHYPA; Uncharacterized protein
STRINGPP1S31_242V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-160HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]