PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_21670V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 329aa MW: 35634.9 Da PI: 7.2681 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 184 | 238 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Pp3c11_21670V3.1.p 184 RKKLRLSKEQSALLEESFKEHSTLNPKQKNALAKQLGLRPRQVEVWFQNRRARTK 238 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.1 | 7.8e-41 | 184 | 273 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq++lLEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e Lkr++d+lkeen+rL+ke eLr ++ Pp3c11_21670V3.1.p 184 RKKLRLSKEQSALLEESFKEHSTLNPKQKNALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCDSLKEENRRLQKELLELR-AI 273 69*************************************************************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.6E-5 | 55 | 143 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 166 | 234 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.92E-18 | 170 | 241 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 180 | 240 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-16 | 182 | 244 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.7E-16 | 184 | 238 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.57E-17 | 184 | 241 | No hit | No description |
PRINTS | PR00031 | 2.2E-5 | 211 | 220 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 215 | 238 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.2E-5 | 220 | 236 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.3E-11 | 240 | 273 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.1E-21 | 240 | 283 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAMMVDGCDR PREEAHRMRA MASSGASLGL GVEFSMVRGG DGVGPRSCPV QLDLLPLRPS 60 SQSNSNSQAT APSVPSSTSY RGLAWQALVG STTNSGSGND DGEVTTYASG GRGGSPRGGI 120 DVNQIPSTDG EEEEEAAVSS PSSIGMKRGR EKSGQEFEVE RERNTTCEMS SRGGSDDEDE 180 GTTRKKLRLS KEQSALLEES FKEHSTLNPK QKNALAKQLG LRPRQVEVWF QNRRARTKLK 240 QTEVDCELLK RCCDSLKEEN RRLQKELLEL RAIKVAPPCV ISHDYYMPLP AATLTMCPSC 300 ERVATVDNRS LTFAKPGFSH LSQSSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 188 | TRKKLRL |
2 | 232 | 240 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17899 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028075 | 0.0 | AB028075.1 Physcomitrella patens mRNA for homeobox protein PpHB4, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388907.1 | 0.0 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | Q6YPD0 | 2e-66 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A2K1JVL8 | 0.0 | A0A2K1JVL8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S31_269V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-68 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_21670V3.1.p |