PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21650V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 331aa    MW: 35849.1 Da    PI: 7.2904
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21650V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-18186240256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Pp3c11_21650V3.2.p 186 RKKLRLSKEQSALLEESFKEHSTLNPKQKNALAKQLGLRPRQVEVWFQNRRARTK 240
                         778899***********************************************98 PP
2HD-ZIP_I/II125.72.1e-40186275191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq++lLEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e Lkr+y++lkeen+rL+ke  eLr ++
  Pp3c11_21650V3.2.p 186 RKKLRLSKEQSALLEESFKEHSTLNPKQKNALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCYESLKEENRRLQKELLELR-AI 275
                         69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.8E-557145IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.2E-18168236IPR009057Homeodomain-like
SuperFamilySSF466892.97E-18172243IPR009057Homeodomain-like
PROSITE profilePS5007117.394182242IPR001356Homeobox domain
SMARTSM003894.1E-16184246IPR001356Homeobox domain
PfamPF000466.8E-16186240IPR001356Homeobox domain
CDDcd000862.82E-17186243No hitNo description
PRINTSPR000312.3E-5213222IPR000047Helix-turn-helix motif
PROSITE patternPS000270217240IPR017970Homeobox, conserved site
PRINTSPR000312.3E-5222238IPR000047Helix-turn-helix motif
SMARTSM003405.8E-21242285IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-10242275IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAMGTMVDGC DRPREEAHRM RAIASSGASL GLGVEFSMVR GGDGVGPRSC PVQLDLLPLR  60
PSSQSNSNSQ ATAPSVPSST SYRGLAWQAL VGSTTNSGSG NDDGEVTTYA SGGRGGSPRG  120
GIDVNQIPST DGEEEEEAAV SSPSSIGMKR GREKSGQEFE VERERNTTCE MSSRGGSDDE  180
DEGTTRKKLR LSKEQSALLE ESFKEHSTLN PKQKNALAKQ LGLRPRQVEV WFQNRRARTK  240
LKQTEVDCEL LKRCYESLKE ENRRLQKELL ELRAIKVAPP CVISHDYYMP LPAATLTMCP  300
SCERVATVDN RSLTFAKPGF SHLSQSSAAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190TRKKLRL
2234242RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.178990.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0280750.0AB028075.1 Physcomitrella patens mRNA for homeobox protein PpHB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388906.10.0homeobox-leucine zipper protein HAT4-like
SwissprotQ6YPD02e-65HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2K1JVM80.0A0A2K1JVM8_PHYPA; Uncharacterized protein
STRINGPP1S31_272V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-67homeobox from Arabidopsis thaliana