PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_21510V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARR-B
Protein Properties Length: 504aa    MW: 54425.5 Da    PI: 6.1924
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_21510V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.92e-27153206155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++W+ eLH++Fv+av+ L G +kA+P++il++m+v+gLt+e+v+SHLQkYRl
  Pp3c11_21510V3.2.p 153 KARVVWSAELHQQFVNAVNYL-GVDKAVPRKILDIMNVQGLTRENVASHLQKYRL 206
                         68*******************.********************************8 PP
2Response_reg61.16e-2179225109
                         EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          v+++ ++++al++l+e++  +Dl++ D+ mp+mdG++ll+ i  e  +lp+i++++ ge + + + ++ Ga d+l Kp+  +el++
  Pp3c11_21510V3.2.p   7 AVTTCNSATKALAMLRENRnyFDLVISDVYMPDMDGFKLLEAIGLEL-DLPVIMMSGDGETDSVMKGIRHGACDYLLKPVRLKELIN 92 
                         6899***********999999**********************5544.6***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011034.838198IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.8E-11194IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-17792IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.99E-277106IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-317119No hitNo description
CDDcd001561.07E-22897No hitNo description
PROSITE profilePS5129410.818150209IPR017930Myb domain
SuperFamilySSF466893.94E-19151210IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-28152210IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24153206IPR006447Myb domain, plants
PfamPF002497.7E-7155205IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MLCGVIAVTT CNSATKALAM LRENRNYFDL VISDVYMPDM DGFKLLEAIG LELDLPVIMM  60
SGDGETDSVM KGIRHGACDY LLKPVRLKEL INIWQHVVRK LVTPRDIPKE ESGEWDEFPK  120
HQDNADFDST ARKRKERSED VAQLVEDVNN LKKARVVWSA ELHQQFVNAV NYLGVDKAVP  180
RKILDIMNVQ GLTRENVASH LQKYRLYLKR LIGVTPQPYP VASFQAAENG TFGGTMQIQP  240
GGRPAASTST KGLNLGGGAS NSSIGGLSRS GVQIDAATLN ALVQLQSLQQ QKQLGPTAAR  300
SGLTTDVVNS QIPADPTGLQ RLDSFELDLL MKTQHDASRQ RGSGGSTDLA DLLNCSKDAL  360
PYMSNLRGQC ELKPAVMGST NPLVGSEPMT AMSMSNLRGV DDGGPSLGST EAGRSHMVNK  420
LGRDFSNSSP AFFSSTSRSN GGAVSDSSFS TNYGDIPDGP PSFLVASPPD LSLLGQLQAF  480
DQVEFDYGQL SQPRRSMSYS SKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21152211463ARR10-B
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.151810.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388633.10.0two-component response regulator ORR21-like isoform X2
RefseqXP_024388634.10.0two-component response regulator ORR21-like isoform X2
TrEMBLA0A2K1JVL40.0A0A2K1JVL4_PHYPA; Uncharacterized protein
STRINGPP1S31_291V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-80response regulator 2