PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_21510V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ARR-B | ||||||||
Protein Properties | Length: 553aa MW: 60002 Da PI: 5.9303 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.7 | 2.2e-27 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ eLH++Fv+av+ L G +kA+P++il++m+v+gLt+e+v+SHLQkYRl Pp3c11_21510V3.1.p 202 KARVVWSAELHQQFVNAVNYL-GVDKAVPRKILDIMNVQGLTRENVASHLQKYRL 255 68*******************.********************************8 PP | |||||||
2 | Response_reg | 84.7 | 2.8e-28 | 33 | 141 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+vdDepl +++++++l+ +y v+++ ++++al++l+e++ +Dl++ D+ mp+mdG++ll+ i e +lp+i++++ ge + + + Pp3c11_21510V3.1.p 33 VLVVDDEPLALMIVERMLQICQY-TVTTCNSATKALAMLRENRnyFDLVISDVYMPDMDGFKLLEAIGLEL-DLPVIMMSGDGETDSVMKG 121 89*********************.***************999999**********************5544.6****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ +el++ Pp3c11_21510V3.1.p 122 IRHGACDYLLKPVRLKELIN 141 *****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 7.97E-38 | 30 | 155 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.9E-41 | 30 | 168 | No hit | No description |
SMART | SM00448 | 3.8E-32 | 31 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.233 | 32 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-24 | 33 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.99E-30 | 34 | 146 | No hit | No description |
PROSITE profile | PS51294 | 10.818 | 199 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-19 | 200 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 201 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-24 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.8E-7 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MVVMKPVNVR GVADDRMERL AHPEGFSPAG LKVLVVDDEP LALMIVERML QICQYTVTTC 60 NSATKALAML RENRNYFDLV ISDVYMPDMD GFKLLEAIGL ELDLPVIMMS GDGETDSVMK 120 GIRHGACDYL LKPVRLKELI NIWQHVVRKL VTPRDIPKEE SGEWDEFPKH QDNADFDSTA 180 RKRKERSEDV AQLVEDVNNL KKARVVWSAE LHQQFVNAVN YLGVDKAVPR KILDIMNVQG 240 LTRENVASHL QKYRLYLKRL IGVTPQPYPV ASFQAAENGT FGGTMQIQPG GRPAASTSTK 300 GLNLGGGASN SSIGGLSRSG VQIDAATLNA LVQLQSLQQQ KQLGPTAARS GLTTDVVNSQ 360 IPADPTGLQR LDSFELDLLM KTQHDASRQR GSGGSTDLAD LLNCSKDALP YMSNLRGQCE 420 LKPAVMGSTN PLVGSEPMTA MSMSNLRGVD DGGPSLGSTE AGRSHMVNKL GRDFSNSSPA 480 FFSSTSRSNG GAVSDSSFST NYGDIPDGPP SFLVASPPDL SLLGQLQAFD QVEFDYGQLS 540 QPRRSMSYSS KT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-21 | 201 | 260 | 4 | 63 | ARR10-B |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15181 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388632.1 | 0.0 | two-component response regulator ORR21-like isoform X1 | ||||
TrEMBL | A0A2K1JVL4 | 0.0 | A0A2K1JVL4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S31_291V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 7e-95 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_21510V3.1.p |