PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_20880V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 302aa    MW: 33721.9 Da    PI: 9.5712
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_20880V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-071033126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ykt+lC  f+r G C++  +C+FaHg
  Pp3c11_20880V3.3.p 10 YKTKLCTLFSR-GSCPR-QSCSFAHG 33
                        9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.765935IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-11939IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.47E-5938IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-51033IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAFGRDLDLY KTKLCTLFSR GSCPRQSCSF AHGNAELRRL SGHPDSRSVG LRSRFERESP  60
LSQLRRSHSQ ERRGRGFRGS PFQDSDYCRS PAKRRRSRSL TAPEPSEFRR RDIKTARIEA  120
NEPHLSDVSA EDLGTDSPGA DKDVKSQSAK EASHMRDSLE EQLAEVKDDN KVLVDEKTKL  180
ELVLESKKNE TSELNEKVTT LNERVAGVQE DCKGITSRTR KLVKVYKVFV RAQDELKKAQ  240
AKLIKLVDDG IVESYSKNMD LNNMKGLLPS HGGMFGDTAT PLDGSISLEA TQRLAGYQKG  300
C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.27580.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388951.10.0zinc finger CCCH domain-containing protein 13-like isoform X1
RefseqXP_024388952.10.0zinc finger CCCH domain-containing protein 13-like isoform X1
RefseqXP_024388953.10.0zinc finger CCCH domain-containing protein 13-like isoform X1
RefseqXP_024388954.10.0zinc finger CCCH domain-containing protein 13-like isoform X1
TrEMBLA0A2K1JVH80.0A0A2K1JVH8_PHYPA; Uncharacterized protein
STRINGPP1S31_349V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-26C3H family protein