PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_20430V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 494aa    MW: 55124.8 Da    PI: 4.9831
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_20430V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.29.6e-32451542103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........XTTSEEEEES CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........kekiweFkhk 84 
                         Fl+k++e+++d++++ ++swse g+sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+Y    ++++e    +        +++ weF+++
  Pp3c11_20430V3.2.p  45 FLTKTFEMVDDPATDAIVSWSEVGSSFVVWNTPEFAQELLPKYFKHNNFSSFVRQLNTYVLGFSTEDEVGFIArisgfrkvDPDRWEFANE 135
                         9**********************************************************555555555443344566654449******** PP

                         XXXXXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                          F +g+++ll++i+r+k +
  Pp3c11_20430V3.2.p 136 GFLRGRRDLLRSIHRRKPS 154
                         ****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3537145IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.67E-3140151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5341151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-154568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2845151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-158395IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-1596108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGGETQWPSA EAKEKNGIPP PAGGTASGNP TSQMDAPQSS GPPPFLTKTF EMVDDPATDA  60
IVSWSEVGSS FVVWNTPEFA QELLPKYFKH NNFSSFVRQL NTYVLGFSTE DEVGFIARIS  120
GFRKVDPDRW EFANEGFLRG RRDLLRSIHR RKPSSHAQQQ QGAYVEGGKS GLEAEIERLK  180
TDKNVLMLEL ARVRQQQQST FRDLQLMAQR LHVSESRQQR MITFLAKAMA NPSLFAQFVS  240
QQNESNHLVR KKRRLPIQED GDMDESMSPE SSIENQIVTY QPSELGEARA RARVIEIFCS  300
SDSHSAMDSR HFEALMREPD TSPNSGDSNI LNRQSRVTVE EINTKLPDIF SSAPVVIDVS  360
VNEAQEATSI SPLNFDIMRA SSGDKSAERS RHPHSEYRDS NDLHEPDCNR GTASHEAEVQ  420
SARTDSAAHN SGFWEQFLTE DPQPVTRAEI DLEREPESET EDVSQGGKNA QQSSFGRPRV  480
EFLSHQLGQL APG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-25231511129Heat shock factor protein 1
5d5v_B5e-25231511129Heat shock factor protein 1
5d5v_D5e-25231511129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.28020.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389317.10.0heat stress transcription factor A-2e-like
TrEMBLA0A2K1JVG90.0A0A2K1JVG9_PHYPA; Uncharacterized protein
STRINGPP1S31_388V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.18e-86heat shock transcription factor A1E