PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_1840V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 508aa MW: 55827 Da PI: 5.6087 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.3e-31 | 225 | 283 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgy+WrKYGqK+vk+s++pr+YYrCt+a+Cpv+k+vers edp ++++ Yeg+H+h+k Pp3c11_1840V3.3.p 225 DDGYKWRKYGQKPVKSSPHPRNYYRCTTANCPVRKRVERSIEDPGLIVTSYEGTHTHPK 283 8********************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 209 | 283 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-28 | 217 | 283 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.503 | 219 | 284 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-36 | 224 | 283 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-25 | 225 | 282 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MLMTDESMAL EEVRKECKET DDCSDSMNQS SREGDEPEAS LEESTDQANV WAQQLFESQY 60 LDLSGASPRG LMSPKFSEMG GFADLGTLCA SPLFSDQLKF LQSWSPKVIP NTVSAWGSGG 120 KTASTSEIVS TSEKSAESDP SSSDFMITSD STGTGSGDEA KTTRKRKSVE RDEGIDGSDG 180 DDVVKEQETS NSSRSMEQGQ KMKGPKRPRE PRYEFKTRSE VDVIDDGYKW RKYGQKPVKS 240 SPHPRNYYRC TTANCPVRKR VERSIEDPGL IVTSYEGTHT HPKINRPKNS SGVGWTSNEF 300 EGPQDLWSQV QNGIPATTSG LPDLGPHQDN LAHLPNLGNL FSAWPTLPFN LAQPPPRLQD 360 NVSMIMAYQL VRLQFELQAR IQQFMSYNAA QQGLAGGLSK NPFTNNPQGL PQFPLPDLSR 420 LLQNYADLAA EPKQVPTPEP LNPSSLLSRR LNAARLRTSS LNPNTQKPNT LRNLATQQSM 480 EGPQDAGPDL KRKLSGPGLP PRPSRSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-23 | 216 | 281 | 9 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-23 | 216 | 281 | 9 | 74 | Probable WRKY transcription factor 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 167 | TRKRKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.608 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ889625 | 0.0 | DQ889625.1 Physcomitrella patens WRKY transcription factor 6 (WRKY6) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389465.1 | 0.0 | uncharacterized protein LOC112288935 isoform X1 | ||||
TrEMBL | A0A2K1JT30 | 0.0 | A0A2K1JT30_PHYPA; Uncharacterized protein | ||||
STRING | PP1S39_217V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 4e-33 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_1840V3.3.p |