PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_18190V3.4.p
Common NameGRS2, PHYPADRAFT_235431
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 548aa    MW: 60484.3 Da    PI: 6.2625
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_18190V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.61.7e-136635461374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA+av+++++e ++ +L++ls las +gdpmqR+a+yf+e+Laar+++s+++l kal++++ +   + + ++a++lf+ v+P++
  Pp3c11_18190V3.4.p  63 LIHLLLACANAVANNNMEYTNVYLEQLSVLASLTGDPMQRVATYFMEGLAARITKSWPGLHKALHSTHLP--FVMDIISARQLFFSVCPYV 151
                         689*************************************************************999998..59***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf++l+ NqaIl+a+ege  vHi+D+++s ++QW+aLlq+L++R++gpp+lRiTgv+     +++ le+tg+rL++ Ae+l++pf+f++l 
  Pp3c11_18190V3.4.p 152 KFAFLMGNQAILDAMEGEMVVHIVDLEASDPVQWLALLQELSNRQAGPPHLRITGVSL----KRDVLEQTGQRLSEEAEKLDIPFQFHPL- 237
                         **********************************************************....9**************************5. PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........................................................... 214
                         + +le+l++++L+vk+gEa+a++++++lh ll                                                           
  Pp3c11_18190V3.4.p 238 VASLENLDVDSLKVKSGEAVAISSMMRLHPLLakesdtvirtdtdyhshpeihhfrsssggyekitsagrdeainstgeigperglkrsre 328
                         889**************************************************************************************** PP

                GRAS 215 ..........................................................desvsleserdevLklvkslsPkvvvvveqead 247
                                                                                   ++s+  +   ++vL+ ++slsPkv+v+veq+++
  Pp3c11_18190V3.4.p 329 tyeaaaevagenlkvpvdgseavdrqrtrstsqsdgngscveprgnsvprplrdessfSDSGFGSGVVQRVLQKLQSLSPKVMVLVEQDSN 419
                         *****************************************************8777755555555899********************** PP

                GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                         hns+s  +rf+eal+yysa+fdsl+ +lp++  er+++E++llg+ei+n+vacegaer+erhe+l +Wr r+++aGF + pls++aa qak
  Pp3c11_18190V3.4.p 420 HNSGSMPDRFVEALHYYSAMFDSLDLTLPQHCLERVTLEKFLLGQEIKNIVACEGAERVERHEKLDRWRIRMRSAGFVARPLSSTAALQAK 510
                         ******************************************************************************************* PP

                GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +ll+ ++ dgyrv++++g+l+l+W+d pL+++SaW+
  Pp3c11_18190V3.4.p 511 RLLHGYPCDGYRVKDDQGCLTLCWQDTPLYTASAWT 546
                         ***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.77637526IPR005202Transcription factor GRAS
PfamPF035145.8E-13463546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016874Molecular Functionligase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MPGMIKGETS NSISHSPSLS VSTTSFSSLS HVSAHQSSSS STSTPAQLTW LQELRSEERG  60
LYLIHLLLAC ANAVANNNME YTNVYLEQLS VLASLTGDPM QRVATYFMEG LAARITKSWP  120
GLHKALHSTH LPFVMDIISA RQLFFSVCPY VKFAFLMGNQ AILDAMEGEM VVHIVDLEAS  180
DPVQWLALLQ ELSNRQAGPP HLRITGVSLK RDVLEQTGQR LSEEAEKLDI PFQFHPLVAS  240
LENLDVDSLK VKSGEAVAIS SMMRLHPLLA KESDTVIRTD TDYHSHPEIH HFRSSSGGYE  300
KITSAGRDEA INSTGEIGPE RGLKRSRETY EAAAEVAGEN LKVPVDGSEA VDRQRTRSTS  360
QSDGNGSCVE PRGNSVPRPL RDESSFSDSG FGSGVVQRVL QKLQSLSPKV MVLVEQDSNH  420
NSGSMPDRFV EALHYYSAMF DSLDLTLPQH CLERVTLEKF LLGQEIKNIV ACEGAERVER  480
HEKLDRWRIR MRSAGFVARP LSSTAALQAK RLLHGYPCDG YRVKDDQGCL TLCWQDTPLY  540
TASAWTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-425554611379Protein SCARECROW
5b3h_A4e-425554610378Protein SCARECROW
5b3h_D4e-425554610378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389853.10.0scarecrow-like protein 3
RefseqXP_024389854.10.0scarecrow-like protein 3
RefseqXP_024389855.10.0scarecrow-like protein 3
RefseqXP_024389856.10.0scarecrow-like protein 3
RefseqXP_024389857.10.0scarecrow-like protein 3
TrEMBLA0A2K1JV700.0A0A2K1JV70_PHYPA; Uncharacterized protein
STRINGPP1S80_27V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-128scarecrow-like 3
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]