PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_1790V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 512aa    MW: 56619.9 Da    PI: 6.0651
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_1790V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30254311259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgy+WrKYGqK+vk+s++pr+YY+Ct+++C vkk+ver++e+p+ v +tY g+Hnh+
  Pp3c11_1790V3.1.p 254 DDGYRWRKYGQKPVKNSHHPRNYYKCTTPNCLVKKQVERCTENPSNVMTTYYGTHNHP 311
                        8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31240312IPR003657WRKY domain
SuperFamilySSF1182903.14E-28245312IPR003657WRKY domain
PROSITE profilePS5081128.954248313IPR003657WRKY domain
SMARTSM007741.9E-36253312IPR003657WRKY domain
PfamPF031061.0E-23254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDPGNGPSGS RSNEQSGPIP GVLKIAPGAE SWSMLIQSSP PRASSSSLAS PNQDSEMDMR  60
STATIIPSAD TGGQLQEDDK FRSCVSEQHD CLKDTDVRSA GLNESQTRSI SRFPTQDVPD  120
VCEMGCRDLI DGEPSNYRHH GCIEGFDAED LEPFSLWELM TTPVEGLLDE RFIKPFCFDD  180
GIKNELEPPT SESTNTKRPK QSLTKRKIDD VEPGTRSTSP VDTRGPKSPS RPSNISDKSG  240
RYVIHTNSDV DIIDDGYRWR KYGQKPVKNS HHPRNYYKCT TPNCLVKKQV ERCTENPSNV  300
MTTYYGTHNH PQINSAGQLE CEPTPHSNIS LVPGEYGPRV PHNYCVLPDH ALRRRRLNHP  360
QQGGPFPQRP NIDLRGLQFS PLSPQYFLSE VFRSMSGNLY PRPRPPLADS RLDPGILLAL  420
AQIYSMWPRG QVPGSAAAYD LQSNSQLPGP SSPLNAGRLL SIQQRILWLQ NLMGEDYLTN  480
RMASQQSSGS EENPEGPLNS EHDLGNPSSS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-23239310374Probable WRKY transcription factor 4
2lex_A3e-23239310374Probable WRKY transcription factor 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389464.10.0uncharacterized protein LOC112288934
TrEMBLA0A2K1JT280.0A0A2K1JT28_PHYPA; Uncharacterized protein
STRINGPP1S39_212V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-27WRKY DNA-binding protein 56