PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_14690V3.2.p
Common NamePHYPADRAFT_159296
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 185aa    MW: 20793.8 Da    PI: 8.779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_14690V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-134489148
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48
                        ++ykG+r+++  gr+ +eIr     + ++++++lg++ taeeAa+a +a
  Pp3c11_14690V3.2.p 44 PKYKGIRYRPELGRYISEIRPA---QpRKRKIWLGTYKTAEEAARAFDA 89
                        79****************9982...3567*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-144492No hitNo description
PfamPF008472.0E-84488IPR001471AP2/ERF domain
PROSITE profilePS5103215.18545106IPR001471AP2/ERF domain
SMARTSM003804.4E-945107IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1245102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-1745104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MHGEMQVMQS SIHSGAGGHG GGHSIVCNSP LPSLSTHLHA VCIPKYKGIR YRPELGRYIS  60
EIRPAQPRKR KIWLGTYKTA EEAARAFDAG IFYTKKPINY NFEDSPSILE PLPENLTPEE  120
EHVEIQKKAK AAAARVQATQ VMLETKPPRN YVSDMTERFH ESQMYCAKPH EPPREIQFAV  180
VLDR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.43430.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388119.11e-131ethylene-responsive transcription factor RAP2-9-like
TrEMBLA0A2K1JUQ71e-129A0A2K1JUQ7_PHYPA; Uncharacterized protein
TrEMBLA9RIN81e-129A9RIN8_PHYPA; Predicted protein
STRINGPP1S11_280V6.11e-130(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-12ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]