PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_14690V3.1.p | ||||||||
Common Name | PHYPADRAFT_159296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 19980.8 Da PI: 9.0711 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.7e-13 | 37 | 82 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 ++ykG+r+++ gr+ +eIr + ++++++lg++ taeeAa+a +a Pp3c11_14690V3.1.p 37 PKYKGIRYRPELGRYISEIRPA---QpRKRKIWLGTYKTAEEAARAFDA 82 79****************9982...3567*****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-8 | 37 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.49E-15 | 37 | 85 | No hit | No description |
SMART | SM00380 | 4.4E-9 | 38 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-12 | 38 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 38 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.185 | 38 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MQSSIHSGAG GHGGGHSIVC NSPLPSLSTH LHAVCIPKYK GIRYRPELGR YISEIRPAQP 60 RKRKIWLGTY KTAEEAARAF DAGIFYTKKP INYNFEDSPS ILEPLPENLT PEEEHVEIQK 120 KAKAAAARVQ ATQVMLETKP PRNYVSDMTE RFHESQMYCA KPHEPPREIQ FAVVLDR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4343 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388119.1 | 1e-131 | ethylene-responsive transcription factor RAP2-9-like | ||||
TrEMBL | A0A2K1JUQ7 | 1e-129 | A0A2K1JUQ7_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9RIN8 | 1e-127 | A9RIN8_PHYPA; Predicted protein | ||||
STRING | PP1S11_280V6.1 | 1e-130 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 2e-12 | related to AP2 9 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_14690V3.1.p |
Entrez Gene | 5917102 |
Publications ? help Back to Top | |||
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